1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tcactaaggaaagacataaaaggaatcgctatatatgttcctttaattatatagttttttcctttaactatatagtttgattttgctaccacgactatagGAGTTAAGCAGTCAACAGGAGTACTTGAAGCTGAAGGCACGTTATGAGGCCCTACAACGGTCCCAGAG
species | Glycine max |
transcript | GLYMA05G28140.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGGTGCGCCTGAGGCTAATGTGTCTACACGGGAAGCCTTG GAGTTAAGCAGTCAACAGGAGTACTTGAAGCTGAAGGCACGTTATGAGGCCEST: gi|193556591|gb|FK515244.1|FK515244
genomic: TGGTGCGCCTGAGGCTAATGTGTCTACACGGGAAGCCTTGgtaatggtga ... acgactatagGAGTTAAGCAGTCAACAGGAGTACTTGAAGCTGAAGGCACGTTATGAGGCC
EST: AATGTAACTATGGTGCGCCTGAGGCTAATGTGTCTACACGGGAAGCCTTG GAGTTAAGCAGTCAACAGGAGTACTTGAAGCTGAAGGCACGTTATGAGGCCEST: gi|6455734|gb|AW186417.1|AW186417
genomic: AATGTAACTATGGTGCGCCTGAGGCTAATGTGTCTACACGGGAAGCCTTGgtaatggtga ... acgactatagGAGTTAAGCAGTCAACAGGAGTACTTGAAGCTGAAGGCACGTTATGAGGCC
EST: AATGTAACTATGGTGCGCCTGAGGCTAATGTGTCTACACGGGAAGCCTTG GAGTTAAGCAGTCAACAGGAGTACTTGAAGCTGAAGGCACGTTATGAGGCCEST: gi|208096065|gb|GD895035.1|GD895035
genomic: AATGTAACTATGGTGCGCCTGAGGCTAATGTGTCTACACGGGAAGCCTTGgtaatggtga ... acgactatagGAGTTAAGCAGTCAACAGGAGTACTTGAAGCTGAAGGCACGTTATGAGGCC
EST: ACTATGGTGCGTCCTTGTAGGCTAATGTGTCTACACGGGAAGCCTTG GAGTTAAGCAGTCAACAGGAGTACTTGAAGCTGAAGGCACGTTATGAGGCCEST: gi|207731537|gb|GD707066.1|GD707066
genomic: ACTATGGTGCG-CC-TG-AGGCTAATGTGTCTACACGGGAAGCCTTGgtaatggtga ... acgactatagGAGTTAAGCAGTCAACAGGAGTACTTGAAGCTGAAGGCACGTTATGAGGCC
EST: CTAATGTGTCTACACGGGAAGCCTTG GAGTTAAGCAGTCAACAGGAGTACTTGAAGCTGAAGGCACGTTATGAGGCCEST: gi|193412704|gb|FK376927.1|FK376927
genomic: CTAATGTGTCTACACGGGAAGCCTTGgtaatggtga ... acgactatagGAGTTAAGCAGTCAACAGGAGTACTTGAAGCTGAAGGCACGTTATGAGGCC
EST: GGTGCGCCTGAGGCTAATGTGTCTACACGGGAAGCCTTG GAGTTAAGCAGTCAACAGGAGTACTTGAAGCTGAAGGCACGTTATGAGGCC
genomic: GGTGCGCCTGAGGCTAATGTGTCTACACGGGAAGCCTTGgtaatggtga ... acgactatagGAGTTAAGCAGTCAACAGGAGTACTTGAAGCTGAAGGCACGTTATGAGGCC
attatatagttttttcctttaactatatagtttgattttgctaccacgactatagGAGTTAAGCAGTCAACAGGAGTACTTGAAGCTGAAGGCACGTTATGAGGCCCTACAACGGTCCCAGAG
tttaactatatagttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcactaaggaaagacataaaaggaatcgctatatatgttcctttaattatatagttttttcctttaactatatagtttgattttgctaccacgactatagGAGTTAAGCAGTCAACAGGAGTACTTGAAGCTGAAGGCACGTTATGAGGCCCTACAACGGTCCCAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - gaaagac
- - - - - - - - -aaaaggaa
- - - - - - - - - - - - - - - - - - gttcctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctacc