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...atgtaattgagtctggagacaaatatatgcaatgtattctttatattttccatgcaccttataattgactaacctttcaagtttttatgatgaatggtagCTAGCAACATCTTCCTTGGCTAGCTTGTCAAGGTTTGCATGGGGAACAAAATCCATAGCTGAGAGTTCACTGAACAAAGAAATCACTTCAGATCTTCCTT
species | Glycine max |
transcript | GLYMA04G43520.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCAAGAGATCCTTCTCAACCACGCAATTTTACTTTCGAG CTAGCAACATCTTCCTTGGCTAGCTTGTCAAGGTTTGCATGGGGAACAAAAEST: gi|10231867|gb|BE800755.1|BE800755
genomic: GCAAGAGATCCTTCTCAACCACGCAATTTTACTTTCGAGgtgatttgat ... tgaatggtagCTAGCAACATCTTCCTTGGCTAGCTTGTCAAGGTTTGCATGGGGAACAAAA
EST: GCAAGAGATCCTTCTCAACCACGCAATTTTACTTTCGAG CTAGCAACATCTTCCTTGGCTAGCTTGTCAAGGTTTGCATGGGGAACAAAAEST: gi|298192682|gb|HO033116.1|HO033116
genomic: GCAAGAGATCCTTCTCAACCACGCAATTTTACTTTCGAGgtgatttgat ... tgaatggtagCTAGCAACATCTTCCTTGGCTAGCTTGTCAAGGTTTGCATGGGGAACAAAA
EST: GCAAGAGATCCTTCTCAACCACGCAATTTTACTTTCGAG CTAGCAACATCTTCCTTGGCTAGCTTGTCAAGGTTTGCATGGGGAACAAAA
genomic: GCAAGAGATCCTTCTCAACCACGCAATTTTACTTTCGAGgtgatttgat ... tgaatggtagCTAGCAACATCTTCCTTGGCTAGCTTGTCAAGGTTTGCATGGGGAACAAAA
ttttccatgcaccttataattgactaacctttcaagtttttatgatgaatggtagCTAGCAACATCTTCCTTGGCTAGCTTGTCAAGGTTTGCATGGGGAACAAAATCCATAGCTGAGAGTTCACTGAACAAAGAAATCACTTCAGATCTTCCTT
gactaac putative branch site (score: 1)
ttataattgactaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgtaattgagtctggagacaaatatatgcaatgtattctttatattttccatgcaccttataattgactaacctttcaagtttttatgatgaatggtagCTAGCAACATCTTCCTTGGCTAGCTTGTCAAGGTTTGCATGGGGAACAAAATCCATAGCTGAGAGTTCACTGAACAAAGAAATCACTTCAGATCTTCCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA