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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcaacctcattaatatatagtaatgtttttcttgttcgtttgtttgctcccatgaataatgaattatttccttcttgtttttgttggtatgcagAGCTTATGGTTTTGGGATTTATTTCTTTGCTCTTAACATTTGGCCAAAATTACATTTCTAAAATGTGTATTCCCTCCAAGTATGCGAAAACAATGCTCCC

Basic information

species Glycine max
transcript GLYMA04G01710.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G01710.1 (Glycine max), 3'ss of exon 2
lower sequence: AT2G33670.1 (Arabidopsis thaliana), 3'ss of exon 2
gtgagcaacctcattaatatatagtaatgtttttcttgttcgtttgtttgctcccatgaataatgaattatttccttcttgtttttgttggtat-gcagAGCTTATGGTTTTGGGATTTATTTCTTTGCTCTTAACATTTGGCCAAAATTACATTTCTAAAATGTGTATTCCCTCCAAGTATGCGAAAACAATGCTCCC
            |  ||    |   | || |||| || ||  ||| |||     | ||  | |  | || |     | ||  | || ||| | | ||||||||||||||||||||||| ||||||||| | ||||||||||| ||||| |||||  | |   ||||| |  | || |  || |   |  | |||  |  
----------gtaccaaaccctccaattgattttttttttttttttttt-----cgtgggttacaagttttagaactttttgtgttattgattttgcagAGCTTATGGTTTTGGGATTCATTTCTTTGTTATTAACATTTGGACAAAACTACATAGCAAGTTTGTGTGTGGCGTCAAGATACGGCCATGCGATGTCCTT

upper sequence: GLYMA04G01710.1 (Glycine max), 3'ss of exon 2
lower sequence: AT1G42560.1 (Arabidopsis thaliana), 3'ss of exon 2
gtgagcaacctcattaatatatagtaatgtttttcttgttcgtt-----tgtttgctcccatgaataatgaattatttccttcttgtttttgttggtatgcagAGCTTATGGTTTTGGGATTTATTTCTTTGCTCTTAACATTTGGCCAAAATTACATTTCTAAAATGTGTATTCCCTCCAAGTATGCGAAAACAATGCTCCC
|| ||  |  | | | ||  || |||    | || || ||| |      | || | ||| ||  |||   | |||  ||    || | ||   |  |  | |||||||||||||||||||||||||||  ||||  |||||||||||||||| |||||| | |  || ||| |||| || |  || |   |  |||||     
gttagggatgtaactgatggatcgtatccctattatt-ttcatgaaaagttttggttcctatatatatatatttaactcaaaattatgttacatatt--gtagAGCTTATGGTTTTGGGATTTATTTCCCTGCTTCTAACATTTGGCCAAAACTACATTGCGAGCATATGTGTTCCATCAAGATACGGCCATGCAATGTCTTT

upper sequence: GLYMA04G01710.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv18s0122g00910.t01 (Vitis vinifera), 3'ss of exon 2
--gtgagcaacctcattaatatatagtaatgtttttcttgt-tcgtttgtttgctccca---tgaataatgaattatttccttcttgtttttgttggtatgcagAGCTTATGGTTTTGGGATTTATTTCTTTGCTCTTAACATTTGGCCAAAATTACATTTCTAAAATGTGTATTCCCTCCAAGTATGCGAAAACAATGCTCCC
  | ||||    || ||   | | |  ||  | | |||||| | |||  |||| |       |   || |||   || | | || |  |        | |||||| |||||| || | ||||| |||||| | ||||| |||||||| ||||| |||||||| ||||| |||||||||||  |   |||  | || ||| | ||
gtgagagctttttctttttcaaaaaaaaagttgtatcttgtatagttcttttgtttttggtttttctagtga-caatcttcctcctcctggataaattttgcagAACTTATGATTCTAGGATTCATTTCTCTACTCTTGACATTTGGGCAAAACTACATTTCCAAAATCTGTATTCCCTCTGACCTTGCTGATACGATGTTACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtttgctcccatgaataatgaattatttccttcttgtttttgttggtatgcagAGCTTATGGTTTTGGGATTTATTTCTTTGCTCTTAACATTTGGCCAAAATTACATTTCTAAAATGTGTATTCCCTCCAAGTATGCGAAAACAATGCTCCC
                        ttatttccttcttgtt  CT-rich tract
            atgaataatgaattat  TA-rich tract