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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtgaattgaattgaattgagttgcaattcaattcaattgtctcactgcttctttgtttgtgtttgtctggctttgaattttgattatgatgggtttgaagttgttactgttgttgttgtggttgcagAGATTTCGTGTTGGATGTGGAGCGGGGAGCGGCAATCGACCACGATGAGAATCAAGTATCTAGAGGCTGCGTTGAACCAGGACATTCAGTTCTTCGACAC

Basic information

species Glycine max
transcript GLYMA03G34080.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G34080.1 (Glycine max), 3'ss of exon 2
lower sequence: AT2G36910.1 (Arabidopsis thaliana), 3'ss of exon 2
gtcagtgaattgaattgaattgagttgcaattcaattcaattgtctcactgcttctttgtttgtgtttgtctggctttgaattttgattatgatgggtttgaagttgttactgttgttgttgtggttgcagAGATTTCGTGTTGGATGTGGAGCGGGGAGCGGCAATCGACCACGATGAGAATCAAGTATCTAGAGGCTGCGTTGAACCAGGACATTCAGTTCTTCGACAC
                                             | |        ||  ||     | |     |||  | | |  |  ||||  | ||   ||| | | | | ||| | || ||||||||||||||||||||||||||||| || ||| | ||| | || | |||||| || |||||| |||| || || ||||| || |||||||||||||| || ||
--------------------------------------------gttagaagaaagttacttaaagatctaaacttttatactgttctcttgatctgattcg-gttttaaatatggtt-tcgttgttgcagAGATTTCGTGTTGGATGTGGAGTGGAGAGAGACAAACAACGAAGATGAGGATTAAGTATTTAGAAGCAGCTTTGAATCAAGACATTCAGTTCTTTGATAC

upper sequence: GLYMA03G34080.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv08s0007g05060.t01 (Vitis vinifera), 3'ss of exon 2
gtcagtgaattgaattgaattgagttgcaattcaattcaattgtctcactgcttctttgtttgtgtttgtctggctttgaattttgattatgat---gggtttgaagttgttactgttgttgttgtggttgcagAGATTTCGTGTTGGATGTGGAGCGGGGAGCGGCAATCGACCACGATGAGAATCAAGTATCTAGAGGCTGCGTTGAACCAGGACATTCAGTTCTTCGACAC
                                        |    | |    |||||| | ||| |||||   | | |  | | ||| |||| |   || ||||    | |   || |    ||    || ||||||| |||||||||||||||| ||| ||| ||||||| |||| |||||| |||||||| ||||| || || |||||||||||||||||||| || |||||
---------------------------------------gtgagttga--aattctttctctgtatttgttctgttct--actgtgactatggtcttggttttggttgtatagttgcttgaattcgtttttcagAGATATCGTGTTGGATGTGGACCGGAGAGAGGCAATCCACCAAGATGAGGATCAAGTACCTAGAAGCGGCTTTGAACCAGGACATTCAGTTTTTTGACAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgaattttgattatgatgggtttgaagttgttactgttgttgttgtggttgcagAGATTTCGTGTTGGATGTGGAGCGGGGAGCGGCAATCGACCACGATGAGAATCAAGTATCTAGAGGCTGCGTTGAACCAGGACATTCAGTTCTTCGACAC
     ttttgat  putative branch site (score: 4)
     ttttgattat  TA-rich tract