1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtgccttctcttttttccctttgcttccatcaatgtactatatctctacatgaccataagccaattctcttgcactattgcagCTATCCAACCTCGAAGTTTGGTTTCAGAGGCCCAAAGACATCACAAGAAAATTGTTATCTGGAGATCTTGACCTTGGTATTGTTGGACTCGATACTTTCA
species | Glycine max |
transcript | GLYMA03G33360.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGTCAGTGAAGCAGGTCAATCCTCGTCAGTATGTTGCTGAAATTCCTCAG CTATCCAACCTCGAAGTTTGGTTTCAGAGGCCCAAAGACATCACAAGAAAAEST: gi|193686964|gb|FK629997.1|FK629997
genomic: TGTCAGTGAAGCAGGTCAATCCTCGTCAGTATGTTGCTGAAATTCCTCAGgtgccttctc ... actattgcagCTATCCAACCTCGAAGTTTGGTTTCAGAGGCCCAAAGACATCACAAGAAAA
EST: TGTCAGTGAAGCAGGTCAATCCTCGTCAGTATGTTGCTGAAATTCCTCAG CTATCCAACCTCGAAGTTTGGTTTCAGAGGCCCAAAGACATEST: gi|192295795|gb|FG990861.1|FG990861
genomic: TGTCAGTGAAGCAGGTCAATCCTCGTCAGTATGTTGCTGAAATTCCTCAGgtgccttctc ... actattgcagCTATCCAACCTCGAAGTTTGGTTTCAGAGGCCCAAAGACAT
EST: TGTCAGTGAAGCAGGTCAATCCTCGTCAGTATGTTGCTGAAATTCCTCAG CTATCCAACCTCGAAGTTTGGTTTCAGAGGCCCAAAGACATCACAAGAAAA
genomic: TGTCAGTGAAGCAGGTCAATCCTCGTCAGTATGTTGCTGAAATTCCTCAGgtgccttctc ... actattgcagCTATCCAACCTCGAAGTTTGGTTTCAGAGGCCCAAAGACATCACAAGAAAA
atcaatgtactatatctctacatgaccataagccaattctcttgcactattgcagCTATCCAACCTCGAAGTTTGGTTTCAGAGGCCCAAAGACATCACAAGAAAATTGTTATCTGGAGATCTTGACCTTGGTATTGTTGGACTCGATACTTTCA
tactatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgccttctcttttttccctttgcttccatcaatgtactatatctctacatgaccataagccaattctcttgcactattgcagCTATCCAACCTCGAAGTTTGGTTTCAGAGGCCCAAAGACATCACAAGAAAATTGTTATCTGGAGATCTTGACCTTGGTATTGTTGGACTCGATACTTTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC