1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttaattaactggaagtgagtcaacacttgacactcattctgaaagagcttattagttcttttgaatgttatgatgattattagttttgcccttgttgcagTGTTAACAGAGGCATGAAGATTGAAGAATTCAAATTCATATATTGGATGGAATATGCACATCGTATGTGGGGAAGGGCACTAGGAGTTATGTTTGCTTTG
species | Glycine max |
transcript | GLYMA02G47340.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAATGGTTGCAAGAGTTTGACAAATATAAGCAGTCACCTGAGTTCAAGCG TGTTAACAGAGGCATGAAGATTGAAGAATTCAAATTCATATATTGGATGGAEST: gi|192304393|gb|FG996715.1|FG996715
genomic: GAATGGTTGCAAGAGTTTGACAAATATAAGCAGTCACCTGAGTTCAAGCGgtaaactgca ... cttgttgcagTGTTAACAGAGGCATGAAGATTGAAGAATTCAAATTCATATATTGGATGGA
EST: GAATGGTTGCAAGAGTTTGACAAATATAAGCAGTCACCTGAGTTCAAGCG TGTTAACAGAGGCATGAAGATTGAAGAATTCAAATTCATATATTGGATGGA
genomic: GAATGGTTGCAAGAGTTTGACAAATATAAGCAGTCACCTGAGTTCAAGCGgtaaactgca ... cttgttgcagTGTTAACAGAGGCATGAAGATTGAAGAATTCAAATTCATATATTGGATGGA
agcttattagttcttttgaatgttatgatgattattagttttgcccttgttgcagTGTTAACAGAGGCATGAAGATTGAAGAATTCAAATTCATATATTGGATGGAATATGCACATCGTATGTGGGGAAGGGCACTAGGAGTTATGTTTGCTTTG
ttttgccctt CT-rich tract
ttatgatgattatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaattaactggaagtgagtcaacacttgacactcattctgaaagagcttattagttcttttgaatgttatgatgattattagttttgcccttgttgcagTGTTAACAGAGGCATGAAGATTGAAGAATTCAAATTCATATATTGGATGGAATATGCACATCGTATGTGGGGAAGGGCACTAGGAGTTATGTTTGCTTTG
- - - - - - - - - - - -cacttga
- - - - - - - - - - - - - - - cactcat
- - - - - - - - - - - - - - - - - - - ctgaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttttgcc