1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ctgttagcttctgagtaaacgtggaaaaaccacattttggatttggaaccaaattttatttgataaatgacaaccaaattgattttgatggattttgcagGAGAATTAGCCACAGAACTCACCATCAAAACCATGGACACATTGAGAAGGATGAGTCATGGGTTCCA
species | Glycine max |
transcript | GLYMA02G39230.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTGGTGGGACACATCTTGCATTCCTCAATTCTTGTGCCATACCATGGATG GAGAATTAGCCACAGAACTCACCATCAAAACCATGGACACATTGAGAAGGAEST: gi|151407473|gb|EV277288.1|EV277288
genomic: CTGGTGGGACACATCTTGCATTCCTCAATTCTTGTGCCATACCATGGATGgttagttcat ... gattttgcagGAGAATTAGCCACAGAACTCACCATCAAAACCATGGACACATTGAGAAGGA
EST: CTGGTGGGACACATCTTGCATTCCTCAATTCTTGTGCCATACCATGGATG GAGAATTAGCCACAGAACTCACCATCAAAACCATGGACACATTGAGAAGGAEST: gi|298197456|gb|HO044935.1|HO044935
genomic: CTGGTGGGACACATCTTGCATTCCTCAATTCTTGTGCCATACCATGGATGgttagttcat ... gattttgcagGAGAATTAGCCACAGAACTCACCATCAAAACCATGGACACATTGAGAAGGA
EST: CTGGTGGGACACATCTTGCATTCCTCAATTCTTGTGCCATACCATGGATG GAGAATTAGCCACAGAACTCACCATCAAAACCATGGACACATTGAEST: gi|192305128|gb|FG994678.1|FG994678
genomic: CTGGTGGGACACATCTTGCATTCCTCAATTCTTGTGCCATACCATGGATGgttagttcat ... gattttgcagGAGAATTAGCCACAGAACTCACCATCAAAACCATGGACACATTGA
EST: CTGGTGGGACACATCTTGCATTCCTCAATTCTTGTGCCATACCATGGATG GAGAATTAGCCACAGAACTCACCATCAAAACCATGGACACATTGAGAAGGAEST: gi|151394272|gb|EV264143.1|EV264143
genomic: CTGGTGGGACACATCTTGCATTCCTCAATTCTTGTGCCATACCATGGATGgttagttcat ... gattttgcagGAGAATTAGCCACAGAACTCACCATCAAAACCATGGACACATTGAGAAGGA
EST: CTGGTGGGACACATCTTGCATTCCTCAATTCTTGTGCCATACCATGGATG GAGAATTAGCCACAGAACTCACCATCAAAACCATGGACACATTGAGAAGGAEST: gi|298189379|gb|HO037782.1|HO037782
genomic: CTGGTGGGACACATCTTGCATTCCTCAATTCTTGTGCCATACCATGGATGgttagttcat ... gattttgcagGAGAATTAGCCACAGAACTCACCATCAAAACCATGGACACATTGAGAAGGA
EST: CTGGTGGGACACATCTTGCATTCCTCAATTCTTGTGCCATACCATGGATG GAGAATTAGCCACAGAACTCACCATCAAAACCATGGACACATTGAGAAGGAEST: gi|213600296|gb|DB955878.1|DB955878
genomic: CTGGTGGGACACATCTTGCATTCCTCAATTCTTGTGCCATACCATGGATGgttagttcat ... gattttgcagGAGAATTAGCCACAGAACTCACCATCAAAACCATGGACACATTGAGAAGGA
EST: CTGGTGGGACACATCTTGCATTCCTCAATTCTTGTGCCATACCATGGATG GAGAATTAGCCACAGAACTCACCATCAAAACCATGGACACATTGAGAAGGA
genomic: CTGGTGGGACACATCTTGCATTCCTCAATTCTTGTGCCATACCATGGATGgttagttcat ... gattttgcagGAGAATTAGCCACAGAACTCACCATCAAAACCATGGACACATTGAGAAGGA
gaaccaaattttatttgataaatgacaaccaaattgattttgatggattttgcagGAGAATTAGCCACAGAACTCACCATCAAAACCATGGACACATTGAGAAGGATGAGTCATGGGTTCCA
ttttgat putative branch site (score: 4)
aaattttatttgataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgttagcttctgagtaaacgtggaaaaaccacattttggatttggaaccaaattttatttgataaatgacaaccaaattgattttgatggattttgcagGAGAATTAGCCACAGAACTCACCATCAAAACCATGGACACATTGAGAAGGATGAGTCATGGGTTCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - gcttctg
- - - - - - - - - - - - - -aaccaca
- - - - - - - - - - - - - - - - - - - ggatttg
- - - - - - - - - - - - - - - - - - - - - - - aaccaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaccaa