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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaaatatatattttaaccactataattaattggtaatggtctttctacttttccttttgttaagcttcaatatgttctcagtttaaacttgataatgcagGAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG

Basic information

species Glycine max
transcript GLYMA02G33350.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192296776|gb|FG993074.1|FG993074
EST:     TGCCGCTTCCGCCGAGGGTGTTGCCTTGGTTGCCCCCGACACTTCTCCGA                         GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG
genomic: TGCCGCTTCCGCCGAGGGTGTTGCCTTGGTTGCCCCCGACACTTCTCCGAgtaaatcaga ... gataatgcagGAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG
EST: gi|7924639|gb|AW830665.1|AW830665
EST:     TGCCGCTTCCGCCGAGGGTGTTGCCTTGGTTGCCCCCGACACTTCTCCGA                         GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG
genomic: TGCCGCTTCCGCCGAGGGTGTTGCCTTGGTTGCCCCCGACACTTCTCCGAgtaaatcaga ... gataatgcagGAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG
EST: gi|298169342|gb|HO020702.1|HO020702
EST:     TGCCGCTTCCGCCGAGGGTGTTGCCTTGGTTGCCCCCGACACTTCTCCGA                         GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG
genomic: TGCCGCTTCCGCCGAGGGTGTTGCCTTGGTTGCCCCCGACACTTCTCCGAgtaaatcaga ... gataatgcagGAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG
EST: gi|13251945|gb|BG362848.1|BG362848
EST:     TGCCGCTTCCGCCGAGGGTGTTGCCTTGGTTGCCCCCGACACTTCTCCGA                         GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG
genomic: TGCCGCTTCCGCCGAGGGTGTTGCCTTGGTTGCCCCCGACACTTCTCCGAgtaaatcaga ... gataatgcagGAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG
EST: gi|9899509|gb|BE608477.1|BE608477
EST:     TGCCGCTTCCGCCGAGGGTGTTGCCTTGGTTGCCCCCGACACTTCTCCGA                         GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG
genomic: TGCCGCTTCCGCCGAGGGTGTTGCCTTGGTTGCCCCCGACACTTCTCCGAgtaaatcaga ... gataatgcagGAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG
EST: gi|208112790|gb|GD909757.1|GD909757
EST:     GGGTG-TGCCTTGGTTG-CCCCGACACTTCTCCGA                         GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG
genomic: GGGTGTTGCCTTGGTTGCCCCCGACACTTCTCCGAgtaaatcaga ... gataatgcagGAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG
EST: gi|14990995|gb|BI316668.1|BI316668
EST:     TGCCGCTTCCGCCGAGGGTGTTGCCTTGGTTGCCCCCGACACTTCTCCGA                         GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG
genomic: TGCCGCTTCCGCCGAGGGTGTTGCCTTGGTTGCCCCCGACACTTCTCCGAgtaaatcaga ... gataatgcagGAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG
EST: gi|21994919|gb|BQ786447.1|BQ786447
EST:     TGCCGCTTCCGCCGAGGGTGTTGCCTTGGTTGCCCCCGACACTTCTCCGA                         GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG
genomic: TGCCGCTTCCGCCGAGGGTGTTGCCTTGGTTGCCCCCGACACTTCTCCGAgtaaatcaga ... gataatgcagGAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG
EST: gi|16347920|gb|BI973515.1|BI973515
EST:     TGCCGCTTCCGCCGAGGGTGTTGCCTTGGTTGCCCCCGACACTTCTCCGA                         GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG
genomic: TGCCGCTTCCGCCGAGGGTGTTGCCTTGGTTGCCCCCGACACTTCTCCGAgtaaatcaga ... gataatgcagGAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG
EST: gi|151409952|gb|EV279760.1|EV279760
EST:     TGCCGCTTCCGCCGAGGGTGTTGCCTTGGTTGCCCCCGACACTTCTCCGA                         GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG
genomic: TGCCGCTTCCGCCGAGGGTGTTGCCTTGGTTGCCCCCGACACTTCTCCGAgtaaatcaga ... gataatgcagGAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG
EST: gi|207805139|gb|GD778676.1|GD778676
EST:     CCGACACTTCTCCGA                         GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG
genomic: CCGACACTTCTCCGAgtaaatcaga ... gataatgcagGAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG
EST: gi|58017950|gb|CX704692.1|CX704692
EST:     TGCCGCTTCCGCCGAGGGTGTTGCCTTGGTTGCCCCCGACACTTCTCCGA                         GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG
genomic: TGCCGCTTCCGCCGAGGGTGTTGCCTTGGTTGCCCCCGACACTTCTCCGAgtaaatcaga ... gataatgcagGAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG
EST: gi|151409483|gb|EV279291.1|EV279291
EST:     TGCCGCTTCCGCCGAGGGTGTTGCCTTGGTTGCCCCCGACACTTCTCCGA                         GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG
genomic: TGCCGCTTCCGCCGAGGGTGTTGCCTTGGTTGCCCCCGACACTTCTCCGAgtaaatcaga ... gataatgcagGAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG
EST: gi|33390499|gb|CA853694.1|CA853694
EST:     TGCCGCTTCCGCCGAGGGTGTTGCCTTGGTTGCCCCCGACACTTCTCCGA                         GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG
genomic: TGCCGCTTCCGCCGAGGGTGTTGCCTTGGTTGCCCCCGACACTTCTCCGAgtaaatcaga ... gataatgcagGAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG
EST: gi|12774209|gb|BG239136.1|BG239136
EST:     TGCCGCTTCCGCCGAGGGTGTTGCCTTGGTTGCCCCCGACACTTCTCCGA                         GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG
genomic: TGCCGCTTCCGCCGAGGGTGTTGCCTTGGTTGCCCCCGACACTTCTCCGAgtaaatcaga ... gataatgcagGAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG
EST: gi|207826665|gb|GD798278.1|GD798278
EST:     TTGGTTGCCCCCGACACTTCTCCGA                         GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG
genomic: TTGGTTGCCCCCGACACTTCTCCGAgtaaatcaga ... gataatgcagGAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG
EST: gi|57575937|gb|CX548908.1|CX548908
EST:     TGCCGCTTCCGCCGAGGGTGTTGCCTTGGTTGCCCCCGACACTTCTCCGA                         GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG
genomic: TGCCGCTTCCGCCGAGGGTGTTGCCTTGGTTGCCCCCGACACTTCTCCGAgtaaatcaga ... gataatgcagGAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG
EST: gi|193395336|gb|FK357829.1|FK357829
EST:     GGTTGCCCCCGACACTTCTCCGTA                         GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG
genomic: GGTTGCCCCCGACACTTCTCCG-Agtaaatcaga ... gataatgcagGAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG
EST: gi|298198180|gb|HO039719.1|HO039719
EST:     TGCCGCTTCCGCCGAGGGTGTTGCCTTGGTTGCCCCCGACACTTCTCCGA                         GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG
genomic: TGCCGCTTCCGCCGAGGGTGTTGCCTTGGTTGCCCCCGACACTTCTCCGAgtaaatcaga ... gataatgcagGAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG
EST: gi|151396504|gb|EV266381.1|EV266381
EST:     TGCCGCTTCCGCCGAGGGTGTTGCCTTGGTTGCCCCCGACACTTCTCCGA                         GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG
genomic: TGCCGCTTCCGCCGAGGGTGTTGCCTTGGTTGCCCCCGACACTTCTCCGAgtaaatcaga ... gataatgcagGAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG
EST: gi|58020784|gb|CX707526.1|CX707526
EST:     GACACTTCTCCGA                         GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG
genomic: GACACTTCTCCGAgtaaatcaga ... gataatgcagGAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG
EST: gi|193642954|gb|FK587800.1|FK587800
EST:     GAGGGTGTTGCCTTGGTTGCCCCCGACACTTCTCCGA                         GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG
genomic: GAGGGTGTTGCCTTGGTTGCCCCCGACACTTCTCCGAgtaaatcaga ... gataatgcagGAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG
EST: gi|151404093|gb|EV273903.1|EV273903
EST:     TGCCGCTTCCGCCGAGGGTGTTGCCTTGGTTGCCCCCGACACTTCTCCGA                         GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG
genomic: TGCCGCTTCCGCCGAGGGTGTTGCCTTGGTTGCCCCCGACACTTCTCCGAgtaaatcaga ... gataatgcagGAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG
EST: gi|298171089|gb|HO016121.1|HO016121
EST:     TGCCGCTTCCGCCGAGGGTGTTGCCTTGGTTGCCCCCGACACTTCTCCGA                         GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCATGGAGTAG
genomic: TGCCGCTTCCGCCGAGGGTGTTGCCTTGGTTGCCCCCGACACTTCTCCGAgtaaatcaga ... gataatgcagGAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG
EST: gi|207715679|gb|GD697479.1|GD697479
EST:     TGCCGCTTCCGCCGAGGGTGTTGCCTTGGTTGCCCCCGACACTTCTCCGA                         GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG
genomic: TGCCGCTTCCGCCGAGGGTGTTGCCTTGGTTGCCCCCGACACTTCTCCGAgtaaatcaga ... gataatgcagGAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG
EST: gi|298191019|gb|HO038498.1|HO038498
EST:     TGCCGCTTCCGCCGAGGGTGTTGCCTTGGTTGCCCCCGACACTTCTCCGA                         GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG
genomic: TGCCGCTTCCGCCGAGGGTGTTGCCTTGGTTGCCCCCGACACTTCTCCGAgtaaatcaga ... gataatgcagGAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG
EST: gi|208044730|gb|GD841098.1|GD841098
EST:     CGCCGAGGGTGTTGCCTTGGTTGCCCCCGACACTTCTCCGA                         GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG
genomic: CGCCGAGGGTGTTGCCTTGGTTGCCCCCGACACTTCTCCGAgtaaatcaga ... gataatgcagGAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG
EST: gi|298166560|gb|HO009999.1|HO009999
EST:     TGCCGCTTCCGCCGAGGGTGTTGCCTTGGTTGCCCCTGACACTTCTCCGA                         GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG
genomic: TGCCGCTTCCGCCGAGGGTGTTGCCTTGGTTGCCCCCGACACTTCTCCGAgtaaatcaga ... gataatgcagGAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG
EST: gi|192298137|gb|FG991417.1|FG991417
EST:     TGCCGCTTCCGCCGAGGGTGTTGCCTTGGTTGCCCCCGACACTTCTCCGA                         GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG
genomic: TGCCGCTTCCGCCGAGGGTGTTGCCTTGGTTGCCCCCGACACTTCTCCGAgtaaatcaga ... gataatgcagGAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG
EST: gi|58021316|gb|CX708057.1|CX708057
EST:     GCTTCCGCCGAGGGTGTTGCCTTGGTTCCCCCCGACACTTTTCCGA                         GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG
genomic: GCTTCCGCCGAGGGTGTTGCCTTGGTTGCCCCCGACACTTCTCCGAgtaaatcaga ... gataatgcagGAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG
EST: gi|298193463|gb|HO033897.1|HO033897
EST:     TGCCGCTTCCGCCGAGGGTGTTGCCTTGGTTGCCCCCGACACTTCTCCGA                         GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG
genomic: TGCCGCTTCCGCCGAGGGTGTTGCCTTGGTTGCCCCCGACACTTCTCCGAgtaaatcaga ... gataatgcagGAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG
EST: gi|298178548|gb|HO024283.1|HO024283
EST:     TGCCGCTTCCGCCGAGGGTGTTGCCTTGGTTGCCCCCGACACTTCTCCGA                         GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG
genomic: TGCCGCTTCCGCCGAGGGTGTTGCCTTGGTTGCCCCCGACACTTCTCCGAgtaaatcaga ... gataatgcagGAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG
EST: gi|58017299|gb|CX704041.1|CX704041
EST:     GCCGCTTCCGCCGAGGGTG-TGCCCTTAGTTGCCCCCGACACTTCTCCGA                         GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG
genomic: GCCGCTTCCGCCGAGGGTGTTG-CCTTGGTTGCCCCCGACACTTCTCCGAgtaaatcaga ... gataatgcagGAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG
EST: gi|192314972|gb|FK010790.1|FK010790
EST:     TGCCGCTTCCGCCGAGGGTGTTGCCTTGGTTGCCCCCGACACTTCTCCGA                         GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG
genomic: TGCCGCTTCCGCCGAGGGTGTTGCCTTGGTTGCCCCCGACACTTCTCCGAgtaaatcaga ... gataatgcagGAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacttttccttttgttaagcttcaatatgttctcagtttaaacttgataatgcagGAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG
                                         acttgat  putative branch site (score: 5)
                                    tttaaacttgataat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aaaatatatattttaaccactataattaattggtaatggtctttctacttttccttttgttaagcttcaatatgttctcagtttaaacttgataatgcagGAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGGAG
- - - - - - - -accacta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agcttca