1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgagtcaaaccccctgtgctttatttttaccctctttttttttagggttaccttattgttattatatgtgtagaacttgtgttaatactgtttgatttgtaacagCTGGTGGAACTGAAAAATGGGGAGACTTATAACGGGCACTTGGTTAATTGTGATACATGGATGAACATCCATCTCCGAGAAGTCATTTGTACCTCTAAA
species | Glycine max |
transcript | GLYMA02G17430.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTTCCCCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCCATG CTGGTGGAACTGAAAAATGGGGAGACTTATAACGGGCACTTGGTTAATTGTEST: gi|254324586|gb|GR834011.1|GR834011
genomic: CTTCCCCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCCATGgtgagtcaaa ... tttgtaacagCTGGTGGAACTGAAAAATGGGGAGACTTATAACGGGCACTTGGTTAATTGT
EST: CTTCCCCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCCATG CTGGTGGAACTGAAAAATGGGGAGACTTATAACGGGCACTTGGTTAATTGTEST: gi|193406386|gb|FK373035.1|FK373035
genomic: CTTCCCCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCCATGgtgagtcaaa ... tttgtaacagCTGGTGGAACTGAAAAATGGGGAGACTTATAACGGGCACTTGGTTAATTGT
EST: CTTCCCCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCCATG CTGGTGGAACTGAAAAATGGGGAGACTTATAACGGGCACTTGGTTAATTGTEST: gi|193581035|gb|FK535976.1|FK535976
genomic: CTTCCCCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCCATGgtgagtcaaa ... tttgtaacagCTGGTGGAACTGAAAAATGGGGAGACTTATAACGGGCACTTGGTTAATTGT
EST: CTTCCCCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCCATG CTGGTGGAACTGAAAAATGGGGAGACTTATAAEST: gi|298174084|gb|HO017420.1|HO017420
genomic: CTTCCCCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCCATGgtgagtcaaa ... tttgtaacagCTGGTGGAACTGAAAAATGGGGAGACTTATAA
EST: CTTCCCCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCCATG CTGGTGGAACTGAAAAATGGGGAGACTTATAACGGGCACTTGGTTAATTGT
genomic: CTTCCCCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCCATGgtgagtcaaa ... tttgtaacagCTGGTGGAACTGAAAAATGGGGAGACTTATAACGGGCACTTGGTTAATTGT
ccttattgttattatatgtgtagaacttgtgttaatactgtttgatttgtaacagCTGGTGGAACTGAAAAATGGGGAGACTTATAACGGGCACTTGGTTAATTGTGATACATGGATGAACATCCATCTCCGAGAAGTCATTTGTACCTCTAAA
ttgttattatatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtcaaaccccctgtgctttatttttaccctctttttttttagggttaccttattgttattatatgtgtagaacttgtgttaatactgtttgatttgtaacagCTGGTGGAACTGAAAAATGGGGAGACTTATAACGGGCACTTGGTTAATTGTGATACATGGATGAACATCCATCTCCGAGAAGTCATTTGTACCTCTAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT