1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...tttctgctaaaattatatcaaaagattatatttttttcaattggtctcttaaattattattccatcctccttcaattgatcaattatagttttaatgcagGTGAACATGGAGTATGGTCTTGATCCCAACGTCGGAGAAGCAATAATGCAAGCAGCACAAGAAGTAGCCGAGGGAAAACTAAACGACCATTTTCCTCTCG
species | Glycine max |
transcript | GLYMA02G01930.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCGAACCCATCATTCGCGCCTTTGGCGTCTTGAAGAAATGCGCTGCTAAG GTGAACATGGAGTATGGTCTTGATCCCAACGTCGGAGAAGCAATAATGCAAEST: gi|19934370|gb|BQ079400.1|BQ079400
genomic: CCGAACCCATCATTCGCGCCTTTGGCGTCTTGAAGAAATGCGCTGCTAAGgtcaacattc ... tttaatgcagGTGAACATGGAGTATGGTCTTGATCCCAACGTCGGAGAAGCAATAATGCAA
EST: CCGAACCCATCATTCGCGCCTTTGGCGTCTTGAAGAAATGCGCTGCTAAG GTGAACATGGAGTATGGTCTTGATCCCAACGTCGGAGAAGCAATAATGCAA
genomic: CCGAACCCATCATTCGCGCCTTTGGCGTCTTGAAGAAATGCGCTGCTAAGgtcaacattc ... tttaatgcagGTGAACATGGAGTATGGTCTTGATCCCAACGTCGGAGAAGCAATAATGCAA
ctcttaaattattattccatcctccttcaattgatcaattatagttttaatgcagGTGAACATGGAGTATGGTCTTGATCCCAACGTCGGAGAAGCAATAATGCAAGCAGCACAAGAAGTAGCCGAGGGAAAACTAAACGACCATTTTCCTCTCG
ttttaat putative branch site (score: 3)
aattgatcaattatag TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttctgctaaaattatatcaaaagattatatttttttcaattggtctcttaaattattattccatcctccttcaattgatcaattatagttttaatgcagGTGAACATGGAGTATGGTCTTGATCCCAACGTCGGAGAAGCAATAATGCAAGCAGCACAAGAAGTAGCCGAGGGAAAACTAAACGACCATTTTCCTCTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT