1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
gtgtgggaatatgcaaaattactcgtcagactactcttctctagtcatatagttgggaaagggaattatattttatttgatgatatttattcctgtagGCCTCTGCCAGCGTGCAACCCCAGTTGTGGCAACCTTCTAGTGGCATCCTGATGACTAATGACATTACTGATAGCAATACTGAGGATGCCGTTCCCTGCT
species | Glycine max |
transcript | GLYMA15G00880.1 |
intron # | 19 |
splice site | 3' |
intron type | U2 |
EST: TTCATCTGCTCTGGAAATGGCAGCGAAATGACCGTAATTCAACTGTAAAG GCCTCTGCCAGCGTGCAACCCCAGTTGTGGCAACCTTCTAGTGGCATCEST: gi|207690426|gb|GD673169.1|GD673169
genomic: TTCATCTGCTCTGGAAATGGCAGCGAAATGACCGTAATTCAACTGTAAAGgtgtgggaat ... attcctgtagGCCTCTGCCAGCGTGCAACCCCAGTTGTGGCAACCTTCTAGTGGCATC
EST: TTCATCTGCTCTGGAAATGGCAGCGAAATGACCGTAATTCAACTGTAAAG GCCTCTGCCAGCGTGCAACCCCAGTTGTGGCAACCTTCTAGTGG
genomic: TTCATCTGCTCTGGAAATGGCAGCGAAATGACCGTAATTCAACTGTAAAGgtgtgggaat ... attcctgtagGCCTCTGCCAGCGTGCAACCCCAGTTGTGGCAACCTTCTAGTGG
gtcatatagttgggaaagggaattatattttatttgatgatatttattcctgtagGCCTCTGCCAGCGTGCAACCCCAGTTGTGGCAACCTTCTAGTGGCATCCTGATGACTAATGACATTACTGATAGCAATACTGAGGATGCCGTTCCCTGCT
atttgat putative branch site (score: 5)
tttattcct putative PPT
aaagggaattatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgggaatatgcaaaattactcgtcagactactcttctctagtcatatagttgggaaagggaattatattttatttgatgatatttattcctgtagGCCTCTGCCAGCGTGCAACCCCAGTTGTGGCAACCTTCTAGTGGCATCCTGATGACTAATGACATTACTGATAGCAATACTGAGGATGCCGTTCCCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG