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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttgaggatacaaaggcaagtcatttatcatatttatttcttgtttatgggaacatatataacttacactcattatcaatttctcgtggatttgcaatgcagTATTTGGTGCAGTCTGCTGTAGATGGTTATAATGTTTGCATATTTGCCTATGGTCAAACTGGCTCTGGAAAGACATTTACAATCTATGGATCTGACAACA

Basic information

species Glycine max
transcript GLYMA09G32740.1
intron # 19
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G32740.1 (Glycine max), 3'ss of exon 19
lower sequence: LOC_Os04g57140.2 (Oryza sativa), 3'ss of exon 18
gtatttgaggatacaaaggcaagtcatttatcatatttatttcttgtttatgggaacat-atataacttacactca----ttatcaatttctcgtggattt-gcaatgcagTATTTGGTGCAGTCTGCTGTAGATGGTTATAATGTTTGCATATTTGCCTATGGTCAAACTGGCTCTGGAAAGACATTTACAATCTATGGATCTGACAACA
                 | |   |  |||| ||  | | |||    |  ||| |  ||| | || | || || |        ||   ||| || || |||| |  ||||||||| | || || || || || ||||| ||||||||||| |||||||| ||||| |||||||| |||||||| || |||||||| ||||||||||| ||||
---------------gtgaccttttttttaacacttctttttaacatacatgtgctcattagattatttgcaattggactccatgtgtttatcatgaattttgtgatgcagTATCTAGTTCAATCGGCCGTTGATGGATATAATGTTTGTATATTTGCTTATGGGCAAACTGGTTCTGGAAAAACTTTTACAATTTATGGATCTGAAAACA

upper sequence: GLYMA09G32740.1 (Glycine max), 3'ss of exon 19
lower sequence: GRMZM2G423861_T02 (Zea mays), 3'ss of exon 17
-----------gtatttgaggatacaaaggcaagtcatttatcatatttatttcttgtttatgggaacatatataacttacactcattatcaatttctcgtggatttgcaatgcagTATTTGGTGCAGTCTGCTGTAGATGGTTATAATGTTTGCATATTTGCCTATGGTCAAACTGGCTCTGGAAAGACATTTACAATCTATGGATCTGACAACA
             ||   |   |        | | |||   | ||||  ||||  | ||| | |||   |   | ||| |   |        || | | |    | ||  ||||||||  |||| || || ||||| ||||| ||||| |||||||||||||| |||||||||||||| ||||||||||| || || || ||||| || || ||||
gtgaatatttcaaatgctatcttttgtgttgatgccatcagtaatataaattt--tatttctaggactgt---tcactgagggtttcatatgatgtgttgaatttatgtgatgcagTACCTGGTACAATCAGCTGTTGATGGATATAACGTTTGCATATTTGCATATGGTCAAACTGGTTCTGGAAAGACTTTCACTATTTATGGTTCAGATAACA

upper sequence: GLYMA09G32740.1 (Glycine max), 3'ss of exon 19
lower sequence: GRMZM2G070273_T01 (Zea mays), 3'ss of exon 17
---------------------gtatttgaggatacaaa-ggcaagtcatttatcatattt---atttcttgtttatgggaacatatataacttacactcattatcaatttctcgtggatt----------tgcaatgcagTATTTGGTGCAGTCTGCTGTAGATGGTTATAATGTTTGCATATTTGCCTATGGTCAAACTGGCTCTGGAAAGACATTTACAATCTATGGATCTGACAACA
                      | | ||  ||| |    || ||  ||  | | || | |   |||  | | ||      |  | |  || |||   ||||| |   ||||   ||   |          ||  ||||||||| |||| || || ||||| ||||| |||||||| || |||||||| ||||| |||||||| ||||||||||| || || || ||||| || || ||||
gtgaatatttcaaatgctatcttttgtgttgatgccgtcggtaatacaaattttatttctaagattgttggcttcatatgatctgttgaatttatgttcattttgggtttcatatgatctgttgaatttatgtgatgcagTATCTGGTACAATCAGCTGTTGATGGATATAATGTCTGTATATTTGCGTATGGCCAAACTGGTTCTGGAAAGACTTTCACTATTTATGGTTCAGAAAACA

upper sequence: GLYMA09G32740.1 (Glycine max), 3'ss of exon 19
lower sequence: AT5G65930.3 (Arabidopsis thaliana), 3'ss of exon 16
gtatttgaggatacaaaggcaagtcatttatcatatttatttcttgtttatgggaacatatataacttacactcattatcaatttctcgtggatttgcaatgcagTATTTGGTGCAGTCTGCTGTAGATGGTTATAATGTTTGCATATTTGCCTATGGTCAAACTGGCTCTGGAAAGACATTTACAATCTATGGATCTGACAACA
        | ||  |  |  | || | |      |||||  | |  |   | |  |      |  |||    | | || ||   | |       ||  ||  ||||||||||| ||||| ||||||||||| ||||| |||||||| ||||| |||||||||||||| |||||||| || || || || |||||   ||| | ||
--------gtat-tattgatatgtaactgtgttcatttacctttcatcctttgttat-----tttcttgtggttactaacatcgttttcc----ttttaa--cagTATTTGGTACAGTCGGCTGTAGATGGGTATAACGTTTGCATCTTTGCATATGGTCAAACTGGTTCTGGAAAAACTTTCACTATATATGGGCATGAGAGCA

upper sequence: GLYMA09G32740.1 (Glycine max), 3'ss of exon 19
lower sequence: Vv04s0044g02020.t01 (Vitis vinifera), 3'ss of exon 18
gtatttgaggatacaaaggcaagtcatttat-catatttatttcttgtttatgggaacatatataacttacactcattat-caatttctcgtggatttgcaat-gcagTATTTGGTGCAGTCTGCTGTAGATGGTTATAATGTTTGCATATTTGCCTATGGTCAAACTGGCTCTGGAAAGACATTTACAATCTATGGATCTGACAACA
             |||    |  ||||  ||   | ||     |||||||  |   ||||  || | |    |   || |   || | |  |   |||   || |||||||||||| || || ||||||||||| |||||||| ||||||||||| |||||||| ||||| |||||||||||||| ||||| ||||| |||||    |
------------gcaagtcaacatcatgaatgtttgttagcaacttgttt--gattacattaattagtagttcaagttgtgtgatattttctatgtttatgattgcagTATTTGGTTCAATCGGCTGTAGATGGATATAATGTGTGCATATTTGCATATGGTCAGACTGGTTCTGGAAAGACATTCACAATTTATGGTTCTGATGGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgggaacatatataacttacactcattatcaatttctcgtggatttgcaatgcagTATTTGGTGCAGTCTGCTGTAGATGGTTATAATGTTTGCATATTTGCCTATGGTCAAACTGGCTCTGGAAAGACATTTACAATCTATGGATCTGACAACA
             aacttac  putative branch site (score: 2)
     acatatataactta  TA-rich tract