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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaggaaatcatagaaagtgtgttgctaaaattcctctatattaaatttgtattactatatgctaacatagatacatggacctggcttgttctctttacagTTCAGTACAACATCCGCCAATTGGAGTTCCAGAGTCTGCGGGATTTTCTTTTCAGCCTTTGCAGCCTAACATCTTAACCGCACCATTTTTGGCTCTCTCT

Basic information

species Glycine max
transcript GLYMA16G10820.2
intron # 18
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213595777|gb|DB981485.1|DB981485
EST:     CAAAATGGAGTTCATAACTCAGCCGAGACTTCGTTGTCATTGTCATTCAG                         TTCAGTACAACATCCGCCAATTGGAGTTCCAGAGTCTGCGGGATTTTCTTT
genomic: CAAAATGGAGTTCATAACTCAGCCGAGACTTCGTTGTCATTGTCATTCAGgtatgcatat ... ctctttacagTTCAGTACAACATCCGCCAATTGGAGTTCCAGAGTCTGCGGGATTTTCTTT
EST: gi|51336439|gb|CO980305.1|CO980305
EST:     CAAAATGGAGTTCATAACTCAGCCGAGACTTCGTTGTCATTGTCATTCAG                         TTCAGTACAACATCCGCCAATTGGAGTTCCAGAGTCTGCGGGATTTTCTTT
genomic: CAAAATGGAGTTCATAACTCAGCCGAGACTTCGTTGTCATTGTCATTCAGgtatgcatat ... ctctttacagTTCAGTACAACATCCGCCAATTGGAGTTCCAGAGTCTGCGGGATTTTCTTT
EST: gi|31307289|gb|CD392492.1|CD392492
EST:     CAAAATGGAGTTCATAACTCAGCCGAGACTTCGTTGTCATTGTCATTCAG                         TTCAGTACAACATCCGCCAATTGGAGTTCCAGAGTCTGCGGGATTTTCTTT
genomic: CAAAATGGAGTTCATAACTCAGCCGAGACTTCGTTGTCATTGTCATTCAGgtatgcatat ... ctctttacagTTCAGTACAACATCCGCCAATTGGAGTTCCAGAGTCTGCGGGATTTTCTTT
EST: gi|15202383|gb|BI425372.1|BI425372
EST:     ATGGAGTTCATAACTCAGCCGAGACTTCGTTGTCATTGTCATTCAG                         TTCAGTACAACATCCGCCAATTGGAGTTCCAGAGTCTGCGGGATTTTCTTT
genomic: ATGGAGTTCATAACTCAGCCGAGACTTCGTTGTCATTGTCATTCAGgtatgcatat ... ctctttacagTTCAGTACAACATCCGCCAATTGGAGTTCCAGAGTCTGCGGGATTTTCTTT
EST: gi|31309502|gb|CD394705.1|CD394705
EST:     CAAAATGGAGTTCATAACTCAGCCGAGACTTCGTTGTCATTGTCATTCAG                         TTCAGTACAACATCCGCCAATTGGAGTTCCAGAGTCTGCGGGATTTTCTTT
genomic: CAAAATGGAGTTCATAACTCAGCCGAGACTTCGTTGTCATTGTCATTCAGgtatgcatat ... ctctttacagTTCAGTACAACATCCGCCAATTGGAGTTCCAGAGTCTGCGGGATTTTCTTT
EST: gi|31475258|gb|CD417286.1|CD417286
EST:     CAAAATGGAGTTCATAACTCAGCCGAGACTTCGTTGTCATTGTCATTCAG                         TTCAGTACAACATCCGCCAATTGGAGTTCCAGAGTCTGCGGGATTTTCTTT
genomic: CAAAATGGAGTTCATAACTCAGCCGAGACTTCGTTGTCATTGTCATTCAGgtatgcatat ... ctctttacagTTCAGTACAACATCCGCCAATTGGAGTTCCAGAGTCTGCGGGATTTTCTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgtattactatatgctaacatagatacatggacctggcttgttctctttacagTTCAGTACAACATCCGCCAATTGGAGTTCCAGAGTCTGCGGGATTTTCTTTTCAGCCTTTGCAGCCTAACATCTTAACCGCACCATTTTTGGCTCTCTCT
              tgctaac  putative branch site (score: 1)
                                       cttgttctctttac  putative PPT
     attactatat  TA-rich tract