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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcttactttctctccctccccctccccctccccctttcttcccccatggatggaacaattctttatacagtattttccatgttatagACTGCCGCAAGCTATCACGCCATAGCTATAGCTCTTTCATTGATAGATGCATTTTCTCTGAGTGTGCAACATGAGCAAACTACACTAAAGATACTTCAAG

Basic information

species Glycine max
transcript GLYMA08G22850.1
intron # 18
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G22850.1 (Glycine max), 3'ss of exon 18
lower sequence: GRMZM5G892758_T01 (Zea mays), 3'ss of exon 2
-gtcttactttctctccctccccctccccctccccctttcttcccccatggatggaacaattctt---------tatacagtattttccatgtta--tagACTGCCGCAAGCTATCACGCCATAGCTATAGCTCTTTCATTGATAGATGCATTTTCTCTGAGTGTGCAACATGAGCAAACTACACTAAAGATACTTCAAG
   || | ||    | | |                   |     ||  ||  |  |  | ||  |          |  || | ||||     | |   ||||||| |||||||| || || ||||| ||||| |||||| |||| ||||| |  || || |||||||||||||| ||||| ||  |  |||||||||| |
cacctgatttataattcattgaataatatgatgaataattgggtcctgtgatttaattacttactatgaactaacaagcaattttttttcaatcaatcagACTGCTGCAAGCTACCATGCTATAGCCATAGCCCTTTCAATGATGGATGCGTACTCCCTAAGTGTGCAACATGAACAAACAACCATGCAGATACTTCAGG

upper sequence: GLYMA08G22850.1 (Glycine max), 3'ss of exon 18
lower sequence: AT1G15290.1 (Arabidopsis thaliana), 3'ss of exon 17
gtcttactttctctccctccccctccccctccccctttcttcccccatggatggaacaattctttatacagtattttccatgttatagACTGCCGCAAGCTATCACGCCATAGCTATAGCTCTTTCATTGATAGATGCATTTTCTCTGAGTGTGCAACATGAGCAAACTACACTAAAGATACTTCAAG
           |  | | |        | | || |  | | | | |||   |  |  |||  |   | | || |||| | | |   ||||||| ||||||||||| || |||||  | ||||| || || || || |||  |||  |||||||||||||||| |||||||||||  ||||||||   |
----------gttcctcccttatctatcttgcctcaatttgcgcgcattcttaaactaatcatgctttctgtgttttac-tttgccagACTGCGGCAAGCTATCATGCAATAGCAGTGGCTCTCTCTTTCATGGAAGCACATTCATTGAGTGTGCAACATGAACAAACTACACTTCAGATACTTACTG

upper sequence: GLYMA08G22850.1 (Glycine max), 3'ss of exon 18
lower sequence: Vv09s0002g07530.t01 (Vitis vinifera), 3'ss of exon 19
gtcttactttctctccctccccctccccctccccctttcttc-----ccccatggat--ggaacaattctttataca-gtattttccatgttatagACTGCCGCAAGCTATCACGCCATAGCTATAGCTCTTTCATTGATAGATGCATTTTCTCTGAGTGTGCAACATGAGCAAACTACACTAAAGATACTTCAAG
|| || || ||||||| |||| ||| | ||| | || |             ||| ||  ||| | |   ||| ||   | | ||  |||  |  ||||||| || |||||||| |||||||| ||||| || ||  |||| || |||| |||||| ||||||||||||||||| ||||||||  ||||||| ||||
gtttttctctctctccatccctctctcactctctctcttagtgtaagtttgatgtattgggagctaaattttgtatttgaacttctcatcctgcagACTGCTGCCAGCTATCATGCCATAGCCATAGCACTGTCTCTGATGGAAGCATATTCTCTCAGTGTGCAACATGAGCAGACTACACTCCAGATACTCCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctttcttcccccatggatggaacaattctttatacagtattttccatgttatagACTGCCGCAAGCTATCACGCCATAGCTATAGCTCTTTCATTGATAGATGCATTTTCTCTGAGTGTGCAACATGAGCAAACTACACTAAAGATACTTCAAG
                                      tattttcc  CT-rich tract
                             tttatacagtatttt  TA-rich tract