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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaattttaaactgttgtgacactagtttctgtctggttttgttaaatttcaactgttcttctgcttagtgttttggatgaataactgatttttgtatatataatgagtacattcttttggaatgataaattgttcttttattgatagCATGAAGAAGGTGCTATTGAGGAAAGAGCTCGTGACTACAATGCAAATTGGATGTCAGCCGTTGAAATCGTTGATGATGACATATACCTAGGTGCAGAAA

Basic information

species Glycine max
transcript GLYMA08G13680.1
intron # 18
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G13680.1 (Glycine max), 3'ss of exon 18
lower sequence: AT4G05420.1 (Arabidopsis thaliana), 3'ss of exon 18
gtaaattttaaactgttgtgacactagtttctgtctggttttgttaaatttcaactgttcttctgcttagtgttttggatgaataactgatttttgtatatataatgagtacattcttttggaatgataaattgttcttttat-tgatagCATGAAGAAGGTGCTATTGAGGAAAGAGCTCGTGACTACAATGCAAATTGGATGTCAGCCGTTGAAATCGTTGATGATGACATATACCTAGGTGCAGAAA
                                                     |    |  |   |  | | | |  | | || ||||||| |   ||| |  | |  ||  ||| |||     ||||   || |||||  || | | |||| || |||||||| ||||||||  | ||||| || ||||||||||||||||||||||| ||||| ||  | |||||||| || ||||| ||||| || |
---------------------------------------------------gtataacttctagacgaaatttgtgtgtttaaaaactgatctac-tatgttcatttggt--attgtttc----tgatggcttattcttgaatgtaaaagCACGAGGAAGGTGCAATTGAGGAGCGGGCTCGGGATTACAATGCAAATTGGATGTCAGCGGTTGAGATACTCGATGATGATATTTACCTCGGTGCTGAGA

upper sequence: GLYMA08G13680.1 (Glycine max), 3'ss of exon 18
lower sequence: Vv10s0003g04360.t01 (Vitis vinifera), 3'ss of exon 18
gtaaattttaaactgttgtgacactagtttctgtctggttttgttaaatttcaactgttcttctgcttagtgttttggatgaataactgatttttgtatatataatgagtacattcttttg-gaatgataaattgttcttttattgatagCATGAAGAAGGTGCTATTGAGGAAAGAGCTCGTGACTACAATGCAAATTGGATGTCAGCCGTTGAAATCGTTGATGATGACATATACCTAGGTGCAGAAA
||||  |    |||  | |   | || |  || | |  |||||  |     ||| | |     | | | | |||      |  |      | |||||   | | ||       ||  |    |  ||||   |  || |||||||   ||||||| |||||||| ||||| ||  |||| ||||||||||||||||||||||||||||| ||||| ||  ||||||||||||| ||||| ||||| || |
gtaagat---gactaatcttcaagtaatccct-tgtccttttggcag----caagtatggcgttccctggagttaaaagagtgttgtgtttgtttgttactcttatcgtcttgttaatggatgtctgattggtcctttttttattttcagCATGAGGAAGGTGCCATTGAAGAGCGAGCCCGTGACTACAATGCAAATTGGATGTCAGCTGTTGAGATTCTTGATGATGACATTTACCTTGGTGCTGAGA

upper sequence: GLYMA08G13680.1 (Glycine max), 3'ss of exon 18
lower sequence: PP1S458_4V6.1 (Physcomitrella patens), 3'ss of exon 18
------------------------gtaaattt-taaactgttgtgacactagtttctgtctggttttgttaaatttcaactgttcttctgctt--agtgttttggatgaata-actgatttttgtatatataat-gagtacattcttttggaatgataaattgttcttttattgatagCATGAAGAAGGTGCTATTGAGGAAAGAGCTCGTGACTACAATGCAAATTGGATGTCAGCCGTTGAAATCGTTGATGATGACATATACCTAGGTGCAGAAA
                         || ||    | |  |||||  || | | | || | |  | | |   ||  ||       | ||| |||  |   |||| || || |  |  |||| |   ||    ||| |  ||    ||   |  ||||||   | | || |   ||| ||| |||||| ||||| || ||||| |||||||| ||||||||||| ||||||||| |||||||||| ||  | ||||| |||| |||||| || |||||||
gttagtacttcccaaactactggaatatatcagcacaaagttgtttcatttggtcct-tttcctctagactaagctctttcccccatctactttcatcttttttgacgagttcaaggattatgaaatgaggaattgtttatcgcctgaagtgatgatattctttactgtatctgacagCCTGAAGAGGGTGCAATCGAGGAGAGAGCTCGAGACTACAATGCTAATTGGATGACAGCCGTTGAGATTTTGGATGACGACACATACCTGGGAGCAGAAA

upper sequence: GLYMA08G13680.1 (Glycine max), 3'ss of exon 18
lower sequence: PP1S203_55V6.1 (Physcomitrella patens), 3'ss of exon 18
---------------------------gtaaattttaaactgttgtgacactagtttctgtc-tggttttgttaaatttcaactgttctt-ctgcttagtgttttggatgaataactgatttttgtatatataatgagtacattcttt------tggaatgataaattgttcttttattgatagCATGAAGAAGGTGCTATTGAGGAAAGAGCTCGTGACTACAATGCAAATTGGATGTCAGCCGTTGAAATCGTTGATGATGACATATACCTAGGTGCAGAAA
                            | |   | | | | ||      |    || |  | |||| | | |   || |  | ||  |   |||||    | ||   | |  |  |||       | |  |||| ||||  || |||      || |   || |  ||   |      |  ||| |||||| || || |||||||| |||||||| ||||||||||| || |||||| |||| ||||| ||  | ||||| ||||  || ||||| || ||||
gtttgtagtttacaaattgctgattttatcaccataagattattacatttcatccttttaccctggtatgggttctttgcttccgtcttgattgctttccatcttttttaatcagttgaagaggtaagaagtaat-agtaggttgtttaatgcttgaagaaatgacctgcattgagtccggcagCCTGAAGAGGGAGCGATTGAGGAGAGAGCTCGAGACTACAATGCCAACTGGATGACAGCGGTTGAGATTCTGGATGACGACACTTATCTAGGGGCGGAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtatatataatgagtacattcttttggaatgataaattgttcttttattgatagCATGAAGAAGGTGCTATTGAGGAAAGAGCTCGTGACTACAATGCAAATTGGATGTCAGCCGTTGAAATCGTTGATGATGACATATACCTAGGTGCAGAAA
                                     ttgttctttt  CT-rich tract
                            aatgataaattgttct  TA-rich tract