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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaattttaaactgttgtgacactagtttctgtctggttttgttaaatttcaactgttgtgctgcttatcgttttggatgaataactgattttttgtatatataatgagtacaccatgttcttttggaatgataagttgttccttattgatagCATGAAGAAGGTGCTATTGAGGAAAGAGCTCGTGACTACAATGCAAATTGGATGTCAGCCGTTGAAATTGTTGATGATGACATATATCTAGGTGCAGAAA

Basic information

species Glycine max
transcript GLYMA05G30530.1
intron # 18
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G30530.1 (Glycine max), 3'ss of exon 18
lower sequence: AT4G05420.1 (Arabidopsis thaliana), 3'ss of exon 18
gtaaattttaaactgttgtgacactagtttctgtctggttttgttaaatttcaactgttgtgctgcttatcgttttggatgaataactgattttttgtatatataatgagtacaccatgttcttttggaat-------gataagttgttccttattg--atagCATGAAGAAGGTGCTATTGAGGAAAGAGCTCGTGACTACAATGCAAATTGGATGTCAGCCGTTGAAATTGTTGATGATGACATATATCTAGGTGCAGAAA
                                                                |  || | || | || |||       || | ||| || | | ||| |  || |||||| ||||| ||       |||   || ||| | | ||  | |||| || |||||||| ||||||||  | ||||| || ||||||||||||||||||||||| ||||| ||  | |||||||| || || || ||||| || |
----------------------------------------------------------------gtataac-ttctagacgaa-----atttgtgtgtttaaaaactga-tctactatgttcatttggtattgtttctgatggcttattcttgaatgtaaaagCACGAGGAAGGTGCAATTGAGGAGCGGGCTCGGGATTACAATGCAAATTGGATGTCAGCGGTTGAGATACTCGATGATGATATTTACCTCGGTGCTGAGA

upper sequence: GLYMA05G30530.1 (Glycine max), 3'ss of exon 18
lower sequence: Vv10s0003g04360.t01 (Vitis vinifera), 3'ss of exon 18
gtaaattttaaactgttgtgacactagtttctgtctggttttgttaaatttcaactgttgtgctgcttatcgttttggatgaataactgattttttgtatatataatgagtacaccatgttcttttggaatgataagttgttccttattgatagCATGAAGAAGGTGCTATTGAGGAAAGAGCTCGTGACTACAATGCAAATTGGATGTCAGCCGTTGAAATTGTTGATGATGACATATATCTAGGTGCAGAAA
||||  |    |||  | |   | || |  || | |  |||||  |     ||| | | | | | | |   |||      |  |   || || |||||   | | ||         |     | |  || || |      ||  |||||   ||||||| |||||||| ||||| ||  |||| ||||||||||||||||||||||||||||| ||||| ||| ||||||||||||| || || ||||| || |
gtaagat---gactaatcttcaagtaatccct-tgtccttttggcag----caagtatggcgttccctggagttaaaagagtgttg-tgtttgtttgttactcttatcgtcttgttaatggatgtctgattggt---cctttttttattttcagCATGAGGAAGGTGCCATTGAAGAGCGAGCCCGTGACTACAATGCAAATTGGATGTCAGCTGTTGAGATTCTTGATGATGACATTTACCTTGGTGCTGAGA

upper sequence: GLYMA05G30530.1 (Glycine max), 3'ss of exon 18
lower sequence: PP1S458_4V6.1 (Physcomitrella patens), 3'ss of exon 18
------------------------gtaaattt-taaactgttgtgacactagtttctgtctggttttgttaaatttcaactgttgtgctgcttatcgttttggatgaataactgattttttgtatatataatgagtacaccatgttcttttggaatgataagttgttccttat-tgatagCATGAAGAAGGTGCTATTGAGGAAAGAGCTCGTGACTACAATGCAAATTGGATGTCAGCCGTTGAAATTGTTGATGATGACATATATCTAGGTGCAGAAA
                         || ||    | |  |||||  || | | | || |     |    |||  |    |     | || ||| || | ||   |||  |  | |    || |  | || | || |     ||   ||   |  ||||||   | | |  ||| ||| ||| |||||| ||||| || ||||| |||||||| ||||||||||| ||||||||| |||||||||| ||| | ||||| |||| ||| || || |||||||
gttagtacttcccaaactactggaatatatcagcacaaagttgtttcatttggtccttttcctctagactaagctctttcccccat-ctactt-tcatcttttttgacgagttcaaggattatgaa-atgaggaattgtttatcgcctgaagtgatgatattctttactgtatctgacagCCTGAAGAGGGTGCAATCGAGGAGAGAGCTCGAGACTACAATGCTAATTGGATGACAGCCGTTGAGATTTTGGATGACGACACATACCTGGGAGCAGAAA

upper sequence: GLYMA05G30530.1 (Glycine max), 3'ss of exon 18
lower sequence: PP1S203_55V6.1 (Physcomitrella patens), 3'ss of exon 18
------------------gtaaattttaa-actgttgtgacactagtttctgtctggtt---ttgttaaatttcaactgttgtgctgcttatcgttttggatgaataactgattttttgtatatataatgagta-caccatgttcttttg-gaatgataagttgttccttattga------tagCATGAAGAAGGTGCTATTGAGGAAAGAGCTCGTGACTACAATGCAAATTGGATGTCAGCCGTTGAAATTGTTGATGATGACATATATCTAGGTGCAGAAA
                  |   ||||||  ||  |      | ||  ||   ||   ||    || ||    |    || |    |  | || | |||  ||   |   | ||   ||| | |  |||  ||||  |  | ||| |||   |  |||  |  ||  |   |||||       ||| |||||| || || |||||||| |||||||| ||||||||||| || |||||| |||| ||||| ||| | ||||| ||||  |||||||| || ||||
gtttgtagtttacaaattgctgattttatcaccataagattattacatttcatccttttaccctggtatgggttctttgcttccgtcttgattgctttccatct-tttttaatcagttgaagaggtaagaagtaatagtaggttgtttaatgcttgaagaaatgacctgcattgagtccggcagCCTGAAGAGGGAGCGATTGAGGAGAGAGCTCGAGACTACAATGCCAACTGGATGACAGCGGTTGAGATTCTGGATGACGACACTTATCTAGGGGCGGAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatataatgagtacaccatgttcttttggaatgataagttgttccttattgatagCATGAAGAAGGTGCTATTGAGGAAAGAGCTCGTGACTACAATGCAAATTGGATGTCAGCCGTTGAAATTGTTGATGATGACATATATCTAGGTGCAGAAA
                                      ttgttcctt  CT-rich tract
                                             ttattgata  TA-rich tract