Sequence
atgc intronic sequence ATGC exonic sequence...tacatacttttgtttatggtaacatataagagtttttgcatatgctattatgctgtttcctggtgtgctgtagtaatactttttatattacatatcacagATGCAGAGCATCAAAGGAGGAGGCCATCCTCGTCCTTCAAATATTGGTGATTTGTTTTCAGAAGGGTCTCTTAATCCATATGCGGACGATCCCTATGCAT
Basic information
species | Glycine max |
transcript | GLYMA14G34810.1 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA14G34810.1 (Glycine max), 3'ss of exon 17
lower sequence: AT1G22275.1 (Arabidopsis thaliana), 3'ss of exon 17
tacatacttttgtttatggtaacatataagagtttttgcatatgctattatgctgtttcctggtgtgctgtagtaatactttttatattacatatcacagATGCAGAGCATCAAAGGAGGAGGCCATCCTCGTCCTTCAAATATTGGTGATTTGTTTTCAGAAGGGTCTCTTAATCCATATGCGGACGATCCCTATGCAT------
||| | | | | | | | |||| | | |||||| | || | | || | || | | | | |||| | | | | |||| | | | | ||||||| || |||||||||| || |||||||||||||| || || || |||||||| || |||||||||||||
--tataatgtagaa-gttttcaggccaagaagttatggatgatgctaggtttctaaaaacatttctgattta--actgcatattattctg-gtcttttaagcgcagGAAACAGCAATGGCCGATCATCCTCACTCTGCAAATATTGGAGACTTGTTTTCAGAAGGTTCCCTCAACCCATATGCTGATGATCCCTATGCATTTGATT
upper sequence: GLYMA14G34810.1 (Glycine max), 3'ss of exon 17
lower sequence: AT1G22260.1 (Arabidopsis thaliana), 3'ss of exon 17
tacatacttttgtttatggtaacatataaga--gtttttgcatatgctattatgctgtttcctggtgtgctgtagtaatactttttatattacatatcacagATGCAGAGCATCAAAGGAGGAGGCCATCCTCGTCCTTCAAATATTGGTGATTTGTTTTCAGAAGGGTCTCTTAATCCATATGCGGACGATCCCTATGCAT------
| | | | || || || ||||| | | ||||| | ||| | | | || || || | ||| | |||||| ||| | | ||| |||| || |||||||||| || |||||||||||||| ||||| || |||||||| || |||||||||||||
-------tccggcacttagaaatgtagaaatttgttttaagtcaagaagttatggatgctgctgctaggttctaa-aacgtgttctgagttaattgcatattatgcagGGCACAGGAATGACGAGTCATGCTCGCTCTGCAAATATTGGAGACTTGTTTTCAGAAGGTTCTCTCAACCCATATGCTGATGATCCCTATGCATTTGATT
upper sequence: GLYMA14G34810.1 (Glycine max), 3'ss of exon 17
lower sequence: Vv18s0001g05600.t01 (Vitis vinifera), 3'ss of exon 17
tacatactt-ttgtttatggtaacatataagagtttttgcatatgctattatgctgtttcctggtgtgctgtagtaatactttttatattacatatcacagATGCAGAGCATCAAAGGAGGAGGCCATCCTCGTCCTTCAAATATTGGTGATTTGTTTTCAGAAGGGTCTCTTAATCCATATGCGGACGATCCCTATGCAT------
||| ||| ||| | | | || || ||| | ||| | || | | |||| || || || |||| ||| | ||||| || || |||| | |||| | ||||||||||| || || || ||||||||||| ||||||||||||||||| || ||||| |||||||
-----actagttgaatataaaagtgaaccattattctttacagtgcaactatatttatttcctttctgct-tatcggagtttgttctatt-tgtattccttgtgcagGAAATTAAGGGAGATAGGCATCTACACCCTTCAAATATAGGCGAGTTATTTTCAGAAGGCTCTCTTAATCCATATGCAGATGATCCTTATGCATTTGATT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tattatgctgtttcctggtgtgctgtagtaatactttttatattacatatcacagATGCAGAGCATCAAAGGAGGAGGCCATCCTCGTCCTTCAAATATTGGTGATTTGTTTTCAGAAGGGTCTCTTAATCCATATGCGGACGATCCCTATGCAT
tgtagtaatacttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tacatacttttgtttatggtaacatataagagtttttgcatatgctattatgctgtttcctggtgtgctgtagtaatactttttatattacatatcacagATGCAGAGCATCAAAGGAGGAGGCCATCCTCGTCCTTCAAATATTGGTGATTTGTTTTCAGAAGGGTCTCTTAATCCATATGCGGACGATCCCTATGCAT
tacatac
- - - - - - - - - - - - - - - - - - tgcatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgta