Sequence
atgc intronic sequence ATGC exonic sequence...tctaccttgatttatcaagctgtcctctatataatcaattcttattgtagcttctattggtcgagaagatgcataatgttcttaaaatttatttttacagGTACAAATTTACATTATTTAATGAGCTGTACTTTCTTGTTGCTGGAGGAACAATTTGGATTG
Basic information
species | Glycine max |
transcript | GLYMA10G33610.1 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G33610.1 (Glycine max), 3'ss of exon 17
lower sequence: LOC_Os07g26210.2 (Oryza sativa), 3'ss of exon 1
---------------------------------------------------tctaccttgatttatcaagctgtcctctatataatcaattcttattgtagcttctattggtcgagaagatgcataatgttcttaaaattta--tttttacagGTACAAATTTACATTATTTAATGAGCTGTACTTTCTTGTTGCTGGAGGAACAATTTGGATTG
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gtgtgtacttgtacatgacttaccagttggctgctgcaaggcagtattatccttgtgttaagttatagagctttgtgttaagttcttagttttcttt--agtctacacaaaa-gataatatccttgtgctttctggtgcttaaattcttgcagGTACAAGGTTACTCTCTTCAATGAGCTGTACTTCCTAGTTGCTGGAGGAACTGTTTGGATAG
upper sequence: GLYMA10G33610.1 (Glycine max), 3'ss of exon 17
lower sequence: GRMZM2G105922_T01 (Zea mays), 3'ss of exon 6
---------------------------------------------------------------------------------tctaccttgatttatcaagctgtcc-tctatataatca-attcttattgtagcttctattggtcgagaagatgcataatgttcttaaaattta-tttttacagGTACAAATTTACATTATTTAATGAGCTGTACTTTCTTGTTGCTGGAGGAACAATTTGGATTG
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gtacatgcttgtgctgtgcatgacttactggcttgattgcttctgacatatttgtacttactgataatcaattatgtgaaattcatgcttgtacttcatattttctgtagagaccataagatttagtttggtattattagagtttgatctcatg-gtaagatgtctgtactttaacccttgcagGTACAAGATTACACTCTTTAATGAGCTGTACTTCCTAGTTGCTGGTGGAACCGTTTGGATTG
upper sequence: GLYMA10G33610.1 (Glycine max), 3'ss of exon 17
lower sequence: Vv05s0051g00910.t01 (Vitis vinifera), 3'ss of exon 12
--tctacct-tgatttatc-aagctgtcctctatataatcaattcttattgtagcttctattggtcgagaagatgcataatgttcttaaaatttatttttacagGTACAAATTTACATTATTTAATGAGCTGTACTTTCTTGTTGCTGGAGGAACAATTTGGATTG
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cctctgcttgtgatgaagctgaaatattcacagaacataatattctagaccttttccttatcattgtggtagatgtgtgatgttgatg----ttatgtgtgcagGTACAAGTTCACGTTATTTAATGAACTCTACTTTTTGGTTGCTGGTGGGACAGTTTGGATTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|254318669|gb|GR828613.1|GR828613EST: ATTGAGAAATGGCAGAATCCTGTTCTTAAGGATGAGGCCCTACCTGAATG GTACAAATTTACATTATTTAATGAGCTGTACTTTCTTGTTGCTGGAGGAAC
genomic: ATTGAGAAATGGCAGAATCCTGTTCTTAAGGATGAGGCCCTACCTGAATGgtaattctca ... atttttacagGTACAAATTTACATTATTTAATGAGCTGTACTTTCTTGTTGCTGGAGGAAC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgtagcttctattggtcgagaagatgcataatgttcttaaaatttatttttacagGTACAAATTTACATTATTTAATGAGCTGTACTTTCTTGTTGCTGGAGGAACAATTTGGATTG
tttattttt CT-rich tract
atgcataatgttctta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tctaccttgatttatcaagctgtcctctatataatcaattcttattgtagcttctattggtcgagaagatgcataatgttcttaaaatttatttttacagGTACAAATTTACATTATTTAATGAGCTGTACTTTCTTGTTGCTGGAGGAACAATTTGGATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- taccttg
- - - - - - - - - - tgtcctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcataa