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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtaaaacctatctccaactgtgttcacgtattatggtttattctagcatgctttgacttcctggtcttctgatgagaggtaatattctgcagGAAGGGGCAATTAAATTAGCAGAATCATTGCTCCAAGGGACTGAAGAGCTTGTGAAACTTGACCTATCATATTGTGGTCTAACATTTAACTTTGTTTTAA

Basic information

species Glycine max
transcript GLYMA08G15560.1
intron # 17
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G15560.1 (Glycine max), 3'ss of exon 17
lower sequence: Vv04s0044g00860.t01 (Vitis vinifera), 3'ss of exon 17
gtgagtaaaa---cctatctccaactg-tgttcacgtattatggtttattctagcatgctttgacttcctggtctt-ctgatgagaggtaatattctgcagGAAGGGGCAATTAAATTAGCAGAATCATTGCTCCAAGGGACTGAAGAGCTTGTGAAACTTGACCTATCATATTGTGGTCTAACATTTAACTTTGTTTTAA
|||||| |||   ||| | | | | || | ||||   ||||| |    |||     ||||    | || ||   |  ||||     | | ||||| ||||||| || ||| |  | ||  |  | || ||| ||   ||| |  |||||||||||||||||||| |||| |||||||| ||||||| | | |   ||   |
gtgagtgaaatttccttttttctattgcttttcattcattattggac-ttcagatgtgctcctgcctcttgtagtgactgaatgttgatgatatt-tgcagGATGGTGCACTACAGTTGACTAAGTCCTTGTTCAGTGGGGCCCAAGAGCTTGTGAAACTTGACTTATCTTATTGTGGACTAACATCTGAGTACATTACCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192332150|gb|FK024596.1|FK024596
EST:     GGACCTTAAATTTGTCAGGACTAATACTTGGAGGCACGGGTGTTGGAACT                         GGAGGGGCAATTAAATTAGCAGAATCATTGCTCCAAGGGACTGAAGAGCTT
genomic: GGACCTTAAATTTGTCAGGACTAATACTTGGAGGCACGGGTGTTGGAACTgtgagtaaaa ... tattctgcagGAAGGGGCAATTAAATTAGCAGAATCATTGCTCCAAGGGACTGAAGAGCTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttattctagcatgctttgacttcctggtcttctgatgagaggtaatattctgcagGAAGGGGCAATTAAATTAGCAGAATCATTGCTCCAAGGGACTGAAGAGCTTGTGAAACTTGACCTATCATATTGTGGTCTAACATTTAACTTTGTTTTAA
                             ttctgat  putative branch site (score: 3)
                                          taatattct  TA-rich tract