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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgatcattgcctatgattatgttgttcttgacttttattatattaagccattgtgtagaaacttatgatttctattataaagaaaaatcaatttgctggtgtttggttacttgcagAAATATGCAGCACAGGGAGGGCCTGAGTTCTTTTTCATTGTAAACATTCAG

Basic information

species Glycine max
transcript GLYMA13G40010.1
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G40010.1 (Glycine max), 3'ss of exon 16
lower sequence: Vv06s0004g02720.t01 (Vitis vinifera), 3'ss of exon 16
gttgatcattgcctatgattatgttgttcttgacttttattatattaagccattgtgtagaaacttatgatttctattataaagaaaaatcaatttgctggtgtttggttacttgcagAAATATGCAGCACAGGGAGGGCCTGAGTTCTTTTTCATTGTAAACATTCAG
||||||   ||  |     ||  |  || ||    ||||  | ||||||   || | | |    | |  | || |  | | |  |||      ||| |  ||  |    | || |||||||||||| || || || || ||||||||||| |||||||||||||| |||
gttgatttgtgattgcacataaatatttttta---ttta--acattaag--gttttcttg----tcacaagttgtcctgtgagcaaa------tttacaagtagtcctattct-gcagAAATATGCGGCGCAAGGTGGCCCTGAGTTCTTCTTCATTGTAAACATCCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10236466|gb|BE805354.1|BE805354
EST:     CTGACAAAAGGGAAGATGACCTTGGTGGCCGTCCTGGGAGCATTGTGCAG                         AAATATGCAGCACAGGGAGGGCCTGAGTTCTTTTTCATTGTAAACATTCAG
genomic: CTGACAAAAGGGAAGATGACCTTGGTGGCCGTCCTGGGAGCATTGTGCAGgttgatcatt ... ttacttgcagAAATATGCAGCACAGGGAGGGCCTGAGTTCTTTTTCATTGTAAACATTCAG
EST: gi|51341316|gb|CO982633.1|CO982633
EST:     CTGACAAAAGGGAAGATGACCTTGGTGGCCGTCCTGGGAGCATTGTGCAG                         AAATATGCATCACAGGGAGGGCCTGAGTTCTTTTTCATTGTAAACATTCAG
genomic: CTGACAAAAGGGAAGATGACCTTGGTGGCCGTCCTGGGAGCATTGTGCAGgttgatcatt ... ttacttgcagAAATATGCAGCACAGGGAGGGCCTGAGTTCTTTTTCATTGTAAACATTCAG
EST: gi|27446108|gb|CA953231.1|CA953231
EST:     CTGACAAAAGGGAAGATGACCTTGGTGGCCGTCCTGGGAGCATTGTGCAG                         AAATATGCAGCACAGGGAGGGCCTGAGTTCTTTTTCATTGTAAACATTCAG
genomic: CTGACAAAAGGGAAGATGACCTTGGTGGCCGTCCTGGGAGCATTGTGCAGgttgatcatt ... ttacttgcagAAATATGCAGCACAGGGAGGGCCTGAGTTCTTTTTCATTGTAAACATTCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttatgatttctattataaagaaaaatcaatttgctggtgtttggttacttgcagAAATATGCAGCACAGGGAGGGCCTGAGTTCTTTTTCATTGTAAACATTCAG
      atttctattataaaga  TA-rich tract