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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaagaaaactgtctagtactagatttatttagtgactgttttagaatgttacagaaaaaatcttctcaagcttgttagtttgtcaatcccatacgtttgtttttttatacctgaaattgatttccagtgcctgttaacttatgcagGATTTACCAAGTTGCAAATGTAAAATCTGAATGGAACTGTATCAAAACCTTCCCTGATTTATCCGGAACAG

Basic information

species Glycine max
transcript GLYMA10G26870.1
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G26870.1 (Glycine max), 3'ss of exon 16
lower sequence: Vv05s0049g01840.t01 (Vitis vinifera), 3'ss of exon 16
gtgaagaaaactgtctagtactagatttatttagtgactgttttagaatgttacagaaaaaatcttctcaagcttgttagtttgtcaatcccatacgtttgtttttttat-acctgaaattgatttccagtgcctgttaacttatgcagGATTTACCAAGTTGCAAATGTAAAATCTGAATGGAACTGTATCAAAACCTTCCCTGATTTATCCGGAACAG
                                                                       | | |||  |     |||   | | |  |   || |  | |  |||||||| | |  || || | |    || |||||  ||||||||||||| ||||||||||| || ||||||||||||||||| ||||||||||| || || ||||
-----------------------------------------------------------------------gttggtttttaatgaaattttagaagaattccttatggttaattgaaattggtattaag-gcttct--ggttttgcagAGTTTACCAAGTTGCCAATGTAAAATCGGAGTGGAACTGTATCAAAACATTCCCTGATTTGTCTGGCACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58024208|gb|CX710949.1|CX710949
EST:     GAGTTTGATCACAGTGGATCCTACCTAGCAGTTGCTGGCTCTGATATAAG                         GATTTACCAAGTTGCAAATGTAAAATCTGAATGGAACTGTATCAAAACCTT
genomic: GAGTTTGATCACAGTGGATCCTACCTAGCAGTTGCTGGCTCTGATATAAGgtgaagaaaa ... acttatgcagGATTTACCAAGTTGCAAATGTAAAATCTGAATGGAACTGTATCAAAACCTT
EST: gi|254349410|gb|GR860208.1|GR860208
EST:     GAGTTTGATCACAGTGGATCCTACCTAGCAGTTGCTGGCTCTGATATAAG                         GATTTACCAAGTTGCAAATGTAAAATCTGAATGGAACTGTATCAAAACCTT
genomic: GAGTTTGATCACAGTGGATCCTACCTAGCAGTTGCTGGCTCTGATATAAGgtgaagaaaa ... acttatgcagGATTTACCAAGTTGCAAATGTAAAATCTGAATGGAACTGTATCAAAACCTT
EST: gi|254349409|gb|GR860207.1|GR860207
EST:     GAGTTTGATCACAGTGGATCCTACCTAGCAGTTGCTGGCTCTGATATAAG                         GATTTACCAAGTTGCAAATGTAAAATCTGAATGGAACTGTATCAAAACCTT
genomic: GAGTTTGATCACAGTGGATCCTACCTAGCAGTTGCTGGCTCTGATATAAGgtgaagaaaa ... acttatgcagGATTTACCAAGTTGCAAATGTAAAATCTGAATGGAACTGTATCAAAACCTT
EST: gi|51341959|gb|CO983276.1|CO983276
EST:     GAGTTTGATCACAGTGGATCCTACCTAGCAGTTGCTGGCTCTGATATAAG                         GATTTACCAAGTTGCAAATGTAAAATCTGAATGGAACTGTATCAAAACCTT
genomic: GAGTTTGATCACAGTGGATCCTACCTAGCAGTTGCTGGCTCTGATATAAGgtgaagaaaa ... acttatgcagGATTTACCAAGTTGCAAATGTAAAATCTGAATGGAACTGTATCAAAACCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacgtttgtttttttatacctgaaattgatttccagtgcctgttaacttatgcagGATTTACCAAGTTGCAAATGTAAAATCTGAATGGAACTGTATCAAAACCTTCCCTGATTTATCCGGAACAG
                                        tgttaac  putative branch site (score: 2)
     ttgtttttttata  TA-rich tract