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...tactcaatgatgagcgcattagtttaattagatgtgtgtttacaaaatttgatattgtaaaacttaatttgcattttgacaaactgcggatgaatttcagGGAGCAGAATTTGCCTGCCAGGGTAGCTTCATCTTACGCCGGAGGAAGGAGACTTGAGAAGGATTTGCAATTTTCAGAGTTTGTCTATTTACTTGCTATC
species | Glycine max |
transcript | GLYMA08G08920.1 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: CTGATGGAGTTGGTTGCATATGATATCATAAAAT GGAGCAGAATTTGCCTGCCAGGGTAGCTTCATCTTACGCCGGAGGAAGGAGEST: gi|208296772|gb|GE091356.1|GE091356
genomic: CTGATGGAG-TGG-TGCATATGATATCATAAAATgtaagattgt ... tgaatttcagGGAGCAGAATTTGCCTGCCAGGGTAGCTTCATCTTACGCCGGAGGAAGGAG
EST: ACAATAGAGTCATGATAACTGATGGAGTGGTGCATATGATATCATAAAAT GGAGCAGAATTTGCCTGCCAGGGTAGEST: gi|16341642|gb|BI967237.1|BI967237
genomic: ACAATAGAGTCATGATAACTGATGGAGTGGTGCATATGATATCATAAAATgtaagattgt ... tgaatttcagGGAGCAGAATTTGCCTGCCAGGGTAG
EST: ACAATAGAGTCATGATAACTGATGGAGTGGTGCATATGATATCATAAAAT GGAGCAGAATTTGCCTGCCAGGGTAGCTTCATCTTACGCCGGAGGAAGGAG
genomic: ACAATAGAGTCATGATAACTGATGGAGTGGTGCATATGATATCATAAAATgtaagattgt ... tgaatttcagGGAGCAGAATTTGCCTGCCAGGGTAGCTTCATCTTACGCCGGAGGAAGGAG
aatttgatattgtaaaacttaatttgcattttgacaaactgcggatgaatttcagGGAGCAGAATTTGCCTGCCAGGGTAGCTTCATCTTACGCCGGAGGAAGGAGACTTGAGAAGGATTTGCAATTTTCAGAGTTTGTCTATTTACTTGCTATC
ttttgac putative branch site (score: 3)
atattgtaaaacttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tactcaatgatgagcgcattagtttaattagatgtgtgtttacaaaatttgatattgtaaaacttaatttgcattttgacaaactgcggatgaatttcagGGAGCAGAATTTGCCTGCCAGGGTAGCTTCATCTTACGCCGGAGGAAGGAGACTTGAGAAGGATTTGCAATTTTCAGAGTTTGTCTATTTACTTGCTATC
- - - -tgatgag
- - - - - - - - - - - - - - - - tgtgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - gtaaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actgcgg