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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttaattgctactcacccctttgcttgaattgctttcaaaggcatatacttcgatatgtacactctatgatacctaagaaacaaacttctctgattttgtttcctttgtgaaaatttccagGAAGGACTTGCTAGGCTAGAAAAAAGGAATAGGTGGGACAGAAAAGAAAGACAACAGGCCCTTGATAACTTGGATCCGTTCCAGGGCGAAGCTCGGACCA

Basic information

species Glycine max
transcript GLYMA08G00910.1
intron # 16
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193590264|gb|FK545292.1|FK545292
EST:     CGCTTGTTGCTGTAGATTCTGATATCAGTGTTAATGCTGCCATGCTACAG                         GAAGGACTTGCTAGGCTAGAAAAAAGGAATAGGTGGGACAGAAAAGAAAGA
genomic: CGCTTGTTGCTGTAGATTCTGATATCAGTGTTAATGCTGCCATGCTACAGgttttaattg ... aaatttccagGAAGGACTTGCTAGGCTAGAAAAAAGGAATAGGTGGGACAGAAAAGAAAGA
EST: gi|22930484|gb|BU547623.1|BU547623
EST:     CGCTTGTTGCTGTAGATTCTGATATCAGTGTTAATGCTGCCATGCTACAG                         GAAGGACTTGCTAGGCTAGAAAAAAGGAATAGGTGGGACAGAAAAGAAAGA
genomic: CGCTTGTTGCTGTAGATTCTGATATCAGTGTTAATGCTGCCATGCTACAGgttttaattg ... aaatttccagGAAGGACTTGCTAGGCTAGAAAAAAGGAATAGGTGGGACAGAAAAGAAAGA
EST: gi|14011207|gb|BG726129.1|BG726129
EST:     CGCTTGTTGCTGTAGATTCTGATATCAGTGTTAATGCTGCCATGCTACAG                         GAAGGACTTGCTAGGCTAGAAAAAAGGAATANGTGGGACAGAAAAGAAAGA
genomic: CGCTTGTTGCTGTAGATTCTGATATCAGTGTTAATGCTGCCATGCTACAGgttttaattg ... aaatttccagGAAGGACTTGCTAGGCTAGAAAAAAGGAATAGGTGGGACAGAAAAGAAAGA
EST: gi|207729143|gb|GD704911.1|GD704911
EST:     CGCTTGTTGCTGTAGATTCTGATATCAGTGTTAATGCTGCCATGCTACAG                         GAAGGACTTGCTA
genomic: CGCTTGTTGCTGTAGATTCTGATATCAGTGTTAATGCTGCCATGCTACAGgttttaattg ... aaatttccagGAAGGACTTGCTA
EST: gi|193447724|gb|FK415473.1|FK415473
EST:     CGCTTGTTGCTGTAGATTCTGATATCAGTGTTAATGCTGCCATGCTACAG                         GAAGGACTTGCTAGGCTAG
genomic: CGCTTGTTGCTGTAGATTCTGATATCAGTGTTAATGCTGCCATGCTACAGgttttaattg ... aaatttccagGAAGGACTTGCTAGGCTAG
EST: gi|193363038|gb|FK328802.1|FK328802
EST:     TGTTAATGCTGCCATGCTACAG                         GAAGGACTTGCTAGGCTAGAAAAAAGGAATAGGTGGGACAGAAAAGAAAGA
genomic: TGTTAATGCTGCCATGCTACAGgttttaattg ... aaatttccagGAAGGACTTGCTAGGCTAGAAAAAAGGAATAGGTGGGACAGAAAAGAAAGA
EST: gi|58016610|gb|CX703352.1|CX703352
EST:     CGCTTGTTGCTGTAGATTCTGATATCAGTGTTAATGCTGCCATGCTACAG                         GAAGGACTTGCTAGGCTAGAAAAAAGGAATAGGTGGGACAGAAAAGAAAGA
genomic: CGCTTGTTGCTGTAGATTCTGATATCAGTGTTAATGCTGCCATGCTACAGgttttaattg ... aaatttccagGAAGGACTTGCTAGGCTAGAAAAAAGGAATAGGTGGGACAGAAAAGAAAGA
EST: gi|207750236|gb|GD723404.1|GD723404
EST:     CGCTTGTTGCTGTAGATTCTGATATCAGTGTTAATGCTGCCATGCTACAG                         GAAGGACTTGCTAGGCTAGAAAAAAGGA-TAGGTGGGACAGAAAAGAAAGA
genomic: CGCTTGTTGCTGTAGATTCTGATATCAGTGTTAATGCTGCCATGCTACAGgttttaattg ... aaatttccagGAAGGACTTGCTAGGCTAGAAAAAAGGAATAGGTGGGACAGAAAAGAAAGA
EST: gi|207795561|gb|GD765858.1|GD765858
EST:     CGCTTGTTGCTGTAGATTCTGATATCAGTGTTAATGCTGCCATGCTACAG                         GAAGGACTTGCTAGGCTAGAAAAAAGGA-TAGGTGGGACAGAAAAGAAAGA
genomic: CGCTTGTTGCTGTAGATTCTGATATCAGTGTTAATGCTGCCATGCTACAGgttttaattg ... aaatttccagGAAGGACTTGCTAGGCTAGAAAAAAGGAATAGGTGGGACAGAAAAGAAAGA
EST: gi|193472095|gb|FK437098.1|FK437098
EST:     CGCTTGTTGCTGTAGATTCTGATATCAGTGTTAATGCTGCCATGCTACAG                         GAAGGACTTGCTAGGCTAGAAAAA-GGAATA
genomic: CGCTTGTTGCTGTAGATTCTGATATCAGTGTTAATGCTGCCATGCTACAGgttttaattg ... aaatttccagGAAGGACTTGCTAGGCTAGAAAAAAGGAATA
EST: gi|207785492|gb|GD757017.1|GD757017
EST:     CGCTTGTTGCTGTAGATTCTGATATCAGTGTTAATGCTGCCATGCTACAG                         GAAGGACTTGCTAGGCT
genomic: CGCTTGTTGCTGTAGATTCTGATATCAGTGTTAATGCTGCCATGCTACAGgttttaattg ... aaatttccagGAAGGACTTGCTAGGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgatacctaagaaacaaacttctctgattttgtttcctttgtgaaaatttccagGAAGGACTTGCTAGGCTAGAAAAAAGGAATAGGTGGGACAGAAAAGAAAGACAACAGGCCCTTGATAACTTGGATCCGTTCCAGGGCGAAGCTCGGACCA
                      ctctgat  putative branch site (score: 4)
                                                tttcc  putative PPT
                           attttgttt  TA-rich tract