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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtctgctatttaagtatatcagttcataaatcataatgtatcttataactcccatcatcttgaatttgattcgttggttttttaatgttattttcttcatgccagGTTGGAAATATGATTTTTTGGTTCATATTCAGTATCCTTGGTCAACCTATGTGTGTACTGCTATACTACCATGACTTGATGAATAGGAAAGGCAAACTTG

Basic information

species Glycine max
transcript GLYMA17G06120.1
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G06120.1 (Glycine max), 3'ss of exon 15
lower sequence: LOC_Os06g36800.1 (Oryza sativa), 3'ss of exon 15
gtacgtctgctatttaagtatatcagttcataaatcataatgtatcttataactcccatcatcttgaatttgattcgttggttttttaatgttattttcttcatgccagGTTGGAAATATGATTTTTTGGTTCATATTCAGTATCCTTGGTCAACCTATGTGTGTACTGCTATACTACCATGACTTGATGAATAGGAAAGGCAAACTTG--
                 |||  | |      | || | ||  |  ||||||   |  | |  ||| |    |    | |  |   | |    | |||      || ||||| || || ||||| ||||||||| | ||||| ||||| || ||||| |||||||| ||  |||||||||||||  | ||||| ||| ||  ||| |     
-----------------gtacgtga---tgcatattacaaaattacttatattgcgtagctacttca-cacggcatgatcttacctgagcactctttgagatttgacagGTGGGCAACATGATATTTTGGTTCTTCTTCAGCATCCTGGGGCAACCAATGTGTGTTCTCTTATACTACCATGATGTCATGAACAGGCAA--CAAGCCCAAA

upper sequence: GLYMA17G06120.1 (Glycine max), 3'ss of exon 15
lower sequence: Vv11s0016g01930.t01 (Vitis vinifera), 3'ss of exon 15
-gtacgtctgctatttaagtat-atcagttcataaatcataatgtatcttataactcccatcatcttgaatttgattcgttggttttttaatgttattttcttcatgccagGTTGGAAATATGATTTTTTGGTTCATATTCAGTATCCTTGGTCAACCTATGTGTGTACTGCTATACTACCATGACTTGATGAATAGGAAAGGCAAACTTG
  |||       |||| ||| | | |  |  | |||    ||      ||  |  || | |||||     | | |             | || |||| || |  ||||||||| ||||||||||| || ||| |  | ||||| || |||||||| || |||||||| || ||||| |||||||||||||||||| | ||||  | |  ||
actacccaatagatttcagtttcacctatcaaaaaactgcaagtctagtttcagttctcctcatcagagctctaaaa-----------tcatattatattttcaatgccagGTGGGAAATATGATCTTCTGGCTGTTTTTCAGCATTCTTGGTCAGCCAATGTGTGTGCTTCTATATTACCATGACTTGATGAATCGAAAAGAGACAACTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151403271|gb|EV273081.1|EV273081
EST:     CTTTGGTCTTGATCACTAATTATCTGCAAAATAAATTCAGAAACTCAATG                         GTTGGAAATATGATTTTTTGGTTCATATTCAGTATCCTTGGTCAACCTATG
genomic: CTTTGGTCTTGATCACTAATTATCTGCAAAATAAATTCAGAAACTCAATGgtacgtctgc ... ttcatgccagGTTGGAAATATGATTTTTTGGTTCATATTCAGTATCCTTGGTCAACCTATG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cccatcatcttgaatttgattcgttggttttttaatgttattttcttcatgccagGTTGGAAATATGATTTTTTGGTTCATATTCAGTATCCTTGGTCAACCTATGTGTGTACTGCTATACTACCATGACTTGATGAATAGGAAAGGCAAACTTG
                             ttttaat  putative branch site (score: 3)
                                     ttattttcttc  CT-rich tract
                           ttttttaatgttattt  TA-rich tract