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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttaactctttggccttctttcacatttcaaaacctctcattttcttcttttttcagtagcacacattggtgaccatttaattattatcatttcctgcagATGTGGTCCAAAATGTATCTCAGGGTGTCAGAGAG

Basic information

species Glycine max
transcript GLYMA16G10820.2
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51336439|gb|CO980305.1|CO980305
EST:     TTGTTTTCTTGGCTTGACTTTAGGTGTAAAGCCCAGTGTTTCAAACTTAG                         ATGTGGTCCAAAATGTATCTCAGGGTGTCAGAGAG
genomic: TTGTTTTCTTGGCTTGACTTTAGGTGTAAAGCCCAGTGTTTCAAACTTAGgtaaatgcaa ... tttcctgcagATGTGGTCCAAAATGTATCTCAGGGTGTCAGAGAG
EST: gi|31307289|gb|CD392492.1|CD392492
EST:     TTGTTTTCTTGGCTTGACTTTAGGTGTAAAGCCCAGTGTTTCAAACTTAG                         ATGTGGTCCNAAATGTATCTCAGGGTGTCAGAGAG
genomic: TTGTTTTCTTGGCTTGACTTTAGGTGTAAAGCCCAGTGTTTCAAACTTAGgtaaatgcaa ... tttcctgcagATGTGGTCCAAAATGTATCTCAGGGTGTCAGAGAG
EST: gi|31475258|gb|CD417286.1|CD417286
EST:     TTGTTTTCTTGGCTTGACTTTAGGTGTAAAGCCCAGTGTTTCAAACTTAG                         ATGTGGTCCAAAATGTATCTCAGGGTGTCAGAGAG
genomic: TTGTTTTCTTGGCTTGACTTTAGGTGTAAAGCCCAGTGTTTCAAACTTAGgtaaatgcaa ... tttcctgcagATGTGGTCCAAAATGTATCTCAGGGTGTCAGAGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcttttttcagtagcacacattggtgaccatttaattattatcatttcctgcagATGTGGTCCAAAATGTATCTCAGGGTGTCAGAGAG
                              atttaat  putative branch site (score: 4)
                                          tcatttcct  putative PPT
                           accatttaattattat  TA-rich tract