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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaaccctatcacttttttccaatataataactttatactaccattcataattaatggtaaatataaaggaagttttaacatttaacagGAAATGAAAGGGCAAGGAGTGACAGATGATAGGCTACAATTACTTAGGGAAGTTACTGGTGCCTTTAGGCCAGGAGTTTTGACTGCTTTAATGGGAGTTA

Basic information

species Glycine max
transcript GLYMA15G02220.1
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G02220.1 (Glycine max), 3'ss of exon 15
lower sequence: AT1G59870.1 (Arabidopsis thaliana), 3'ss of exon 6
gtaagaaccctatcacttttttccaatataataactttatactaccattcataattaatgg--taaatataaaggaagttttaacatttaacagGAAATGAAAGGGCAAGGAGTGACAGATGATAGGCTACAATTACTTAGGGAAGTTACTGGTGCCTTTAGGCCAGGAGTTTTGACTGCTTTAATGGGAGTTA
            | ||| | |||  |  ||| | ||||| ||||  ||| |  || |||    ||||   ||  ||  | ||   ||   | ||||||||| ||  |||||||| |||||    || || ||| | ||||  |  || |||||||| |||||||||||||||||||||||  | |||||||| |
-------gtaagtaactatcttc--acttaaaatctttacactaa-attaaatatgaattacttaaactaaatagatatcttttgatggtatagGAAATGAGAGACCAAGGAGTTACAGAAACAAGACTCCAACTGCTTAAAGGTGTGACTGGTGCATTTAGGCCAGGAGTTTTGACTGCGCTTATGGGAGTGA

upper sequence: GLYMA15G02220.1 (Glycine max), 3'ss of exon 15
lower sequence: Vv09s0002g03560.t01 (Vitis vinifera), 3'ss of exon 4
-------------------------gtaagaaccc---tatcacttttttccaatataataactttatactaccattcataa-----ttaatggtaaatataaaggaagttttaacatttaacagGAAATGAAAGGGCAAGGAGTGACAGATGATAGGCTACAATTACTTAGGGAAGTTACTGGTGCCTTTAGGCCAGGAGTTTTGACTGCTTTAATGGGAGTTA
                         || |  |||    || ||    |||| |||   | || |||| |||   |     ||     ||||  |  || | ||   |   | |      |||||||||||||| | ||||||||||||||| || ||||| ||||||||| |||| || || ||||| |||||||| |||||  | |||||  | |||||||| |
gtaagaatccctttcctttgttggtgttactacctacataacatggatttcaaatg-gagaattttagactgtgaaggccaactaacttaactgccaacacaactaactctgttgatcataacagGAAATGAAGGAGCAAGGAGTGACAGAGGACAGGCTCCAATTACTTCGGGATGTAACGGGTGCATTTAGGCCTGGAGTCCTCACTGCACTGATGGGAGTCA

upper sequence: GLYMA15G02220.1 (Glycine max), 3'ss of exon 15
lower sequence: Vv09s0002g03640.t01 (Vitis vinifera), 3'ss of exon 13
------------------------gtaagaaccc---tatcacttttttccaatataataactttatactaccattcataa-----ttaatggtaaatataaaggaagttttaacatttaacagGAAATGAAAGGGCAAGGAGTGACAGATGATAGGCTACAATTACTTAGGGAAGTTACTGGTGCCTTTAGGCCAGGAGTTTTGACTGCTTTAATGGGAGTTA
                        || |  ||||   || ||    |||| |||   | || |||| |||   |     ||     ||||  |  || ||||   |   | |      |||||||||||||| | ||||||||||||||| || ||||| ||||| ||| |||| || || ||||| || ||||| |||||  | |||||  | |||||||| |
gtaagaatcccttcctttgttggtgttactacccacataacatggatttcaaatg-gagaattttagactgtgaaggccaactaacttaaccgccaacataactaaccctgttgatcataacagGAAATGAAGGAGCAAGGAGTGACAGAGGACAGGCTCCAATTGCTTCGGGATGTAACGGGTGCATTCAGGCCTGGAGTCCTCACTGCACTGATGGGAGTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatactaccattcataattaatggtaaatataaaggaagttttaacatttaacagGAAATGAAAGGGCAAGGAGTGACAGATGATAGGCTACAATTACTTAGGGAAGTTACTGGTGCCTTTAGGCCAGGAGTTTTGACTGCTTTAATGGGAGTTA
                                       ttttaac  putative branch site (score: 2)
                        taaatataaaggaagt  TA-rich tract