Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgtcctcttgtctacttttgtaacttgctaattttcacatttttttaaaaactgaatttaatttgtctgttccagAAAATTGGTTATGACAAGGCAGCAGCAGTTGCCAAGACAGCCCACAAAGAGGGGTGTACTCTTAAGGTGATGATGCCATGTTATACTTGTTTTTCCGTTT

Basic information

species Glycine max
transcript GLYMA10G02040.2
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G02040.2 (Glycine max), 3'ss of exon 15
lower sequence: LOC_Os03g21950.1 (Oryza sativa), 3'ss of exon 15
------gtaagtgtcctcttgtctacttttgtaacttgctaattt-tcacattttttt--------aaaaactgaatttaatttgtctgttccagAAAATTGGTTATGACAAGGCAGCAGCAGTTGCCAAGACAGCCCACAAAGAGGGGTGTACTCTTAAGGTGATGATGCCATGTTATACTTGTTTTTCCGTTT
      | || |   |  || | ||   ||  |  |  ||  | | | |||| |  ||          | ||| ||||  ||||      | ||||||||||| |||||||| || ||||| ||||| |||| ||| |||||||| ||  | ||  | |||                                  
gtaagtgaaattcatccattttgtagccttacatttatcttttctattacatctgctttcgtgagtgcatacttaattctatttaataaatgcagAAAATTGGCTATGACAATGCTGCAGCTGTTGCTAAGAAAGCACACAAAGAAGGAAGCACATTGAAG----------------------------------

upper sequence: GLYMA10G02040.2 (Glycine max), 3'ss of exon 15
lower sequence: GRMZM2G010823_T01 (Zea mays), 3'ss of exon 15
----gtaag-tgtcctcttgtctacttttgtaacttgctaattttcacatttttttaaaaactgaatttaatttgt---ctgttccagAAAATTGGTTATGACAAGGCAGCAGCAGTTGCCAAGACAGCCCACAAAGAGGGGTGTACTCTTAAGGTGATGATGCCATGTTATACTTGTTTTTCCGTTT
    ||||  ||     ||  ||  |||    |  || |  |  |   |     |    | |     ||| ||| |   |  || ||||||||||| |||||||| || ||||| ||||| |||| |||||||||||| ||    ||  | |||                                  
gtaagtaaaatgaaaatttaccttttttaaatatctgtttgtggttgtaaaaagtagtgagccatgcttactttttgaacgattgcagAAAATTGGCTATGACAATGCTGCAGCTGTTGCTAAGAAAGCCCACAAAGAAGGAACCACGTTGAAG----------------------------------

upper sequence: GLYMA10G02040.2 (Glycine max), 3'ss of exon 15
lower sequence: AT2G47510.1 (Arabidopsis thaliana), 3'ss of exon 16
------------------------------gtaagtgtcctcttgtctacttttgtaacttgctaattttcacatttttttaaaaactgaatttaatttgtctgttccagAAAATTGGTTATGACAAGGCAGCAGCAGTTGCCAAGACAGCCCACAAAGAGGGGTGTACTCTTAAGGTGATGATGCCATGTTATACTTGTTTTTCCGTTT
                               ||    |||  ||  | | |    | |||    ||| | |     |  | |      ||||     |  ||| | ||||||||| || |||||||| || |||||||||||||||| ||| |||||||| || |||||  | |||                                  
gtaagtctctaaatattgaactccgcctttttagtcatccgttttaccattaggattactaatgaatgtactttgatgctgagttttggaatccttatcctctttaccagAAAATCGGGTATGACAATGCTGCAGCAGTTGCCAAGAAAGCTCACAAAGAAGGATGTACATTGAAG----------------------------------

upper sequence: GLYMA10G02040.2 (Glycine max), 3'ss of exon 15
lower sequence: AT5G50950.1 (Arabidopsis thaliana), 3'ss of exon 15
gtaagtgtcctcttgt----ctacttttgtaacttgctaattttcacatttttttaaaaactgaattta-----------atttgtctgtt-ccagAAAATTGGTTATGACAAGGCAGCAGCAGTTGCCAAGACAGCCCACAAAGAGGGGTGTACTCTTAAGGTGATGATGCCATGTTATACTTGTTTTTCCGTTT--
|||||| ||    | |    || ||||   || |     || ||| |||| |  | | || ||||||||           |||  ||  || |||||||||||| |||||||| || |||||||| ||||| | ||| |||||||| || || ||  | ||||| |  |    |   |||    |||||      |  
gtaagtctctaaatattaaacttctttgtcaagtcatccatattctcattatgattacaaatgaatttacctcaatgctaattcctcctttaccagAAAATTGGCTATGACAATGCTGCAGCAGTAGCCAAAAGAGCTCACAAAGAAGGATGCACATTAAAGGTAA--ACAATAAACTATTAACGTTTTCATCACTAA

upper sequence: GLYMA10G02040.2 (Glycine max), 3'ss of exon 15
lower sequence: AT5G50950.2 (Arabidopsis thaliana), 3'ss of exon 15
gtaagtgtcctcttgt----ctacttttgtaacttgctaattttcacatttttttaaaaactgaattta-----------atttgtctgtt-ccagAAAATTGGTTATGACAAGGCAGCAGCAGTTGCCAAGACAGCCCACAAAGAGGGGTGTACTCTTAAGGTGATGATGCCATGTTATACTTGTTTTTCCGTTT
|||||| ||    | |    || ||||   || |     || ||| |||| |  | | || ||||||||           |||  ||  || |||||||||||| |||||||| || |||||||| ||||| | ||| |||||||| || || ||  | |||                                  
gtaagtctctaaatattaaacttctttgtcaagtcatccatattctcattatgattacaaatgaatttacctcaatgctaattcctcctttaccagAAAATTGGCTATGACAATGCTGCAGCAGTAGCCAAAAGAGCTCACAAAGAAGGATGCACATTAAAG----------------------------------

upper sequence: GLYMA10G02040.2 (Glycine max), 3'ss of exon 15
lower sequence: Vv07s0005g00880.t01 (Vitis vinifera), 3'ss of exon 16
----gtaagtgtcct---cttgtctacttttgta-acttgctaattttcacatttttt-taaaaactgaatttaatttgtctgttccagAAAATTGGTTATGACAAGGCAGCAGCAGTTGCCAAGACAGCCCACAAAGAGGGGTGTACTCTTAAGGTGATGATGCCATGTTATACTTGTTTTTCCGTTT
    ||   ||| ||   | ||| | | ||  || ||||    |||       | |    || |||| |   |  |   |||||| ||||||||||||||||| || || || || |||||||||| |||||| || |||||  | ||||| |||                                  
gtgagtttctgttctatccctgtgttcattcctacacttctcgattactgtgctctggacaataacttatgctgttgcttctgtttcagAAAATTGGTTATGATAATGCCGCTGCTGTTGCCAAGAAAGCCCATAAGGAGGGAAGGACTCTGAAG----------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193401454|gb|FK369277.1|FK369277
EST:     TCACTGATGCTCGTCACATCCTTAAACCCA                         AAAATTGGTTATGACAAGGCAGCAGCAGTTGCCAAGACAGCCCACAAGGAG
genomic: TCACTGATGCTCGTCACATCCTTAAACCCAgtaagtgtcc ... tctgttccagAAAATTGGTTATGACAAGGCAGCAGCAGTTGCCAAGACAGCCCACAAAGAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taacttgctaattttcacatttttttaaaaactgaatttaatttgtctgttccagAAAATTGGTTATGACAAGGCAGCAGCAGTTGCCAAGACAGCCCACAAAGAGGGGTGTACTCTTAAGGTGATGATGCCATGTTATACTTGTTTTTCCGTTT
                                             tctgttcc  CT-rich tract
        taattttcacattttt  TA-rich tract