Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgaggcattgcttaactttcaatgtcacaagtttaatggtagtttccttcttaaaaacatcttattaaagtgtgttgcttttttcattttattctccagATATCGTACTTGCTATGTGCCCTCGGTGATGGCCATCTCTTAAACTTTATGTTGAATACTAGTACCGGTGAATTAACAGATAGGAAAAAGGTATCTCTAG

Basic information

species Glycine max
transcript GLYMA08G13680.1
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G13680.1 (Glycine max), 3'ss of exon 15
lower sequence: AT4G05420.2 (Arabidopsis thaliana), 3'ss of exon 14
ttgaggcattgcttaacttt-caatgtcacaagtttaatggtagtttccttcttaaaaacatcttattaaagtgtgttgcttttttcatt--ttattctccagATATCGTACTTGCTATGTGCCCTCGGTGATGGCCATCTCTTAAACTTTATGTTGAATACTAGTACCGGTGAATTAACAGATAGGAAAAAGGTATCTCTAG
 |  |       |  || ||   |   |     |  | || | |       || | || |   |||      || || |  |||  |||   ||||  | |||||||| |||||||||||||| || || ||||||||||| || |||||   | || |||| | ||||||  |||||| ||| |||||||| ||||| || |
gtatgattccattggaccttgttacaacgaccatacattgattgagatgagctgagaaccgagttaaatttatg-gtcgaatttgacatacgttatgttgcagATATCTTACTTGCTATGTGCTCTTGGAGATGGCCATCTTTTGAACTTCCAGATGGATACAACTACCGGACAATTAAAAGACAGGAAAAAAGTATCACTCG

upper sequence: GLYMA08G13680.1 (Glycine max), 3'ss of exon 15
lower sequence: Vv10s0003g04360.t01 (Vitis vinifera), 3'ss of exon 15
---ttgaggcattgcttaactttcaatgtcacaagtttaatggtagtttccttcttaaaaacatcttattaaagtgtgttgcttttttcattttattctccagATATCGTACTTGCTATGTGCCCTCGGTGATGGCCATCTCTTAAACTTTATGTTGAATACTAGTACCGGTGAATTAACAGATAGGAAAAAGGTATCTCTAG
   ||    ||||| ||   |   ||             |||||| | | || |||         |    |       ||   | ||   |||   | | |||||| | |||||| | ||||| || || ||||| ||| | || |||||| |  |||| |  ||||| ||||| |||||||||||||||||||| ||||| |
cacttagaccattgttttggtggtaaaaatgt---ccccatggtattctactacttcctcgtgcttccccattagtaattttctattctttttcccttttcagATACCTTACTTGTTGTGTGCACTGGGAGATGGTCATTTGTTGAACTTTTTACTGAACATGAGTACTGGTGAGTTAACAGATAGGAAAAAGGTGTCTCTTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccttcttaaaaacatcttattaaagtgtgttgcttttttcattttattctccagATATCGTACTTGCTATGTGCCCTCGGTGATGGCCATCTCTTAAACTTTATGTTGAATACTAGTACCGGTGAATTAACAGATAGGAAAAAGGTATCTCTAG
                              ttgcttttttcatttt  CT-rich tract
      ttaaaaacatcttatt  TA-rich tract