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...tctatttccactcaatttctgttttccttatgaaatggtgtcgggtgccatatttttttatcttctctatattgattatacataattgaattgtgtgtagGTTGTCAACACACCCCGAGGACCAGTTGAATCCCCCAACGACTTGTTCGAAGTATTCTACGTCGATTATGGAAATCAAGAAGTAGTACCCTACAGTCAAC
species | Glycine max |
transcript | GLYMA06G17050.4 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: ATATAGTCCTTTGTTATTTTCATGCTGACAAATCTTGGTACCGGGCAATG GTTGTCAACACACCCCGAGGACCAGTTGAATCCCCCAACGACTTGTTCGAAEST: gi|7232782|gb|AW568135.1|AW568135
genomic: ATATAGTCCTTTGTTATTTTCATGCTGACAAATCTTGGTACCGGGCAATGgtaagttcct ... ttgtgtgtagGTTGTCAACACACCCCGAGGACCAGTTGAATCCCCCAACGACTTGTTCGAA
EST: ATATAGTCCTTTGTTATTTTCATGCTGACAAATCTTGGTACCGGGCAATG GTTGTCAACACACCCCGAGGACCAGTTGAATCCCCCAACGACTTGTTCGAAEST: gi|192297582|gb|FG989559.1|FG989559
genomic: ATATAGTCCTTTGTTATTTTCATGCTGACAAATCTTGGTACCGGGCAATGgtaagttcct ... ttgtgtgtagGTTGTCAACACACCCCGAGGACCAGTTGAATCCCCCAACGACTTGTTCGAA
EST: ATATAGTCCTTTGTTATTTTCATGCTGACAAATCTTGGTACCGGGCAATG GTTGTCAACACACCCCGAGGACCAGTTGAATCCCCCAACGACTTGTTCGAAEST: gi|298180422|gb|HO021975.1|HO021975
genomic: ATATAGTCCTTTGTTATTTTCATGCTGACAAATCTTGGTACCGGGCAATGgtaagttcct ... ttgtgtgtagGTTGTCAACACACCCCGAGGACCAGTTGAATCCCCCAACGACTTGTTCGAA
EST: ATATAGTCCTTTGTTATTTTCATGCTGACAAATCTTGGTACCGGGCAATG GTTGTCAACACACCCCGAGGACCAGTTGAATCCCCCAACGACTTGTTCGAAEST: gi|51336882|gb|CO980748.1|CO980748
genomic: ATATAGTCCTTTGTTATTTTCATGCTGACAAATCTTGGTACCGGGCAATGgtaagttcct ... ttgtgtgtagGTTGTCAACACACCCCGAGGACCAGTTGAATCCCCCAACGACTTGTTCGAA
EST: ATATAGTCCTTTGTTATTTTCATGCTGACAAATCTTGGTACCGGGCAATG GTTGTCAACACACCCCGAGGACCAGTTGAATCCCCCAACGACTTGTTCGAAEST: gi|193321728|gb|FK287334.1|FK287334
genomic: ATATAGTCCTTTGTTATTTTCATGCTGACAAATCTTGGTACCGGGCAATGgtaagttcct ... ttgtgtgtagGTTGTCAACACACCCCGAGGACCAGTTGAATCCCCCAACGACTTGTTCGAA
EST: ATATAGTCCTTTGTTATTTTCATGCTGACAAATCTTGGTACCGGGCAATG GTTGTCAACACAACCCCGAAGGACCAGTTGAATCCEST: gi|298169310|gb|HO020670.1|HO020670
genomic: ATATAGTCCTTTGTTATTTTCATGCTGACAAATCTTGGTACCGGGCAATGgtaagttcct ... ttgtgtgtagGTTGTCAACACA-CCCCGA-GGACCAGTTGAATCC
EST: ATATAGTCCTTTGTTATTTTCATGCTGACAAATCTTGGTACCGGGCAATG GTTGTCAACACACCCCGAGGACCAGTTGAATCCCCCAACGACTTGTTCGAAEST: gi|11687423|gb|BF595099.1|BF595099
genomic: ATATAGTCCTTTGTTATTTTCATGCTGACAAATCTTGGTACCGGGCAATGgtaagttcct ... ttgtgtgtagGTTGTCAACACACCCCGAGGACCAGTTGAATCCCCCAACGACTTGTTCGAA
EST: ATATAGTCCTTTGTTATTTTCATGCTGACAAATCTTGGTACCGGGCAATG GTTGTCAACACACCCCGAGGACCAGTTGAATCCCCCAACGACTTGTTCGAAEST: gi|6747617|gb|AW318130.1|AW318130
genomic: ATATAGTCCTTTGTTATTTTCATGCTGACAAATCTTGGTACCGGGCAATGgtaagttcct ... ttgtgtgtagGTTGTCAACACACCCCGAGGACCAGTTGAATCCCCCAACGACTTGTTCGAA
EST: TCATGCTGACAAATCTTGGTACCGGGCAATG GTTGTCAACACACCCCGAGGACCAGTTGAATCCCCCAACGACTTGTTCGAA
genomic: TCATGCTGACAAATCTTGGTACCGGGCAATGgtaagttcct ... ttgtgtgtagGTTGTCAACACACCCCGAGGACCAGTTGAATCCCCCAACGACTTGTTCGAA
tgccatatttttttatcttctctatattgattatacataattgaattgtgtgtagGTTGTCAACACACCCCGAGGACCAGTTGAATCCCCCAACGACTTGTTCGAAGTATTCTACGTCGATTATGGAAATCAAGAAGTAGTACCCTACAGTCAAC
tattgat putative branch site (score: 3)
tatttttttatcttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctatttccactcaatttctgttttccttatgaaatggtgtcgggtgccatatttttttatcttctctatattgattatacataattgaattgtgtgtagGTTGTCAACACACCCCGAGGACCAGTTGAATCCCCCAACGACTTGTTCGAAGTATTCTACGTCGATTATGGAAATCAAGAAGTAGTACCCTACAGTCAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT