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...attgaggcattgcttaactttcaatgtcacaagtttaatggtagtttccttcttaaaaatatcctattaaagtgtgttgctttttcaatttattctccagATATCGTACTTGCTATGTGCTCTCGGTGATGGCCATCTCTTAAACTTTATGTTGAATACAAGTACTGGTGAATTAGCAGATAGGAAAAAGGTATCTCTAG
species | Glycine max |
transcript | GLYMA05G30530.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: GGGAGATCATACCTCGTTCTGTTCTTCTTTGTGCCTTTGAAGGG ATATCGTACTTGCTATGTGCTCTCGGTGATGGCCATCTCTTAAACTTTATGEST: gi|207836660|gb|GD806657.1|GD806657
genomic: GGGAGATCATACCTCGTTCTGTTCTTCTTTGTGCCTTTGAAGGGgtaggctttc ... tattctccagATATCGTACTTGCTATGTGCTCTCGGTGATGGCCATCTCTTAAACTTTATG
EST: GGGAGATCTATACCTCGTTCTGTTCTTCTTTGTGCCTTTGAAGGG ATATCGTACTTGCTATGTGCTCTCGGTGATGGCCATCTCTTAAACTTTATGEST: gi|193726107|gb|FK658973.1|FK658973
genomic: GGGAGATC-ATACCTCGTTCTGTTCTTCTTTGTGCCTTTGAAGGGgtaggctttc ... tattctccagATATCGTACTTGCTATGTGCTCTCGGTGATGGCCATCTCTTAAACTTTATG
EST: GGGAGATCATACCTCGTTCTGTTCTTCTTTGTGCCTTTGAAGGG ATATCGTACTTGCTATGTGCTCTCGGTGATGGCCATCTCTTAAACTTTATG
genomic: GGGAGATCATACCTCGTTCTGTTCTTCTTTGTGCCTTTGAAGGGgtaggctttc ... tattctccagATATCGTACTTGCTATGTGCTCTCGGTGATGGCCATCTCTTAAACTTTATG
ttccttcttaaaaatatcctattaaagtgtgttgctttttcaatttattctccagATATCGTACTTGCTATGTGCTCTCGGTGATGGCCATCTCTTAAACTTTATGTTGAATACAAGTACTGGTGAATTAGCAGATAGGAAAAAGGTATCTCTAG
tttattctcc CT-rich tract
tcttaaaaatatccta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attgaggcattgcttaactttcaatgtcacaagtttaatggtagtttccttcttaaaaatatcctattaaagtgtgttgctttttcaatttattctccagATATCGTACTTGCTATGTGCTCTCGGTGATGGCCATCTCTTAAACTTTATGTTGAATACAAGTACTGGTGAATTAGCAGATAGGAAAAAGGTATCTCTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
-ttgaggc
- - - - - - - - - - -caatgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgct