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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgagaaaatgtaactagtaaagtatgatgattgtttatacagtattcttattgtactcttaaatttgacagACTGCTGCTCATGATGGTGTTAAGCTTTGGGATCTACGTAAACTGAAGAACTTCAGGAATTTTGCTCCATATGATTCGGAAACACCAACGAGCTCCG

Basic information

species Glycine max
transcript GLYMA20G21330.1
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G21330.1 (Glycine max), 3'ss of exon 14
lower sequence: GRMZM2G324540_T01 (Zea mays), 3'ss of exon 14
gtatgtga--gaaaatgtaacta-gtaaagtatgatgattgtttatacagtattcttattgtactcttaaatttgacagACTGCTGCTCATGATGGTGTTAAGCTTTGGGATCTACGTAAACTGAAGAACTTCAGGAATTTTGCTCCATATGATTCGGAAACACCAACGAGCTCCG
||| || |   | |    | ||| ||  |  ||||  |   |||||  ||| |||| ||  | |  | |   || ||||||||||||||||||||||||||||||||||||||| |||||| | |  || || |||| |||  |||| ||||||| ||| || ||||| |   | |
gtacgtaatttagataaaagctacgtgcacaatgacaa--atttatttagt-ttctaatatttccatca--ctttacagACTGCTGCTCATGATGGTGTTAAGCTTTGGGATCTTCGTAAATTAAGAAATTTTAGGACTTTCTCTCCCTATGATTTGGACACGCCAACCAATACTG

upper sequence: GLYMA20G21330.1 (Glycine max), 3'ss of exon 14
lower sequence: AC205703.4_FGT004 (Zea mays), 3'ss of exon 4
gtatgtga--gaaaatgtaacta-gtaaagtatgatgattgtttatacagtattcttattgtactcttaaatttgacagACTGCTGCTCATGATGGTGTTAAGCTTTGGGATCTACGTAAACTGAAGAACTTCAGGAATTTTGCTCCATATGATTCGGAAACACCAACGAGCTCCG
||| || |   | |    | ||| ||  |  ||||  |   |||||  ||| |||| ||  | |  | |   || ||||||| ||||||||||||||||||||||||||||||| |||||| | |  || || |||| |||  |||| ||||||| ||| || ||||| |   | |
gtacgtaatttagataaaagctacgtgcacaatgacaa--atttatttagt-ttctaatatttccatca--ctttacagACTACTGCTCATGATGGTGTTAAGCTTTGGGATCTTCGTAAATTAAGAAATTTTAGGACTTTCTCTCCCTATGATTTGGACACGCCAACCAATACTG

upper sequence: GLYMA20G21330.1 (Glycine max), 3'ss of exon 14
lower sequence: GRMZM2G037698_T02 (Zea mays), 3'ss of exon 14
----gtatgtgaga-aaatgtaactagtaaagtatgatgattgtttatacagtattcttattgtactcttaaatttgacagACTGCTGCTCATGATGGTGTTAAGCTTTGGGATCTACGTAAACTGAAGAACTTCAGGAATTTTGCTCCATATGATTCGGAAACACCAACGAGCTCCG
    |||  | ||| ||| |  |   | | ||| | | | |||||||     |  |  |||| | |  | |   ||  ||||||||||||||||||||||| |||||||||||||| || ||| | |  || || ||||  ||  |||| |||||||| || || ||||| |   | |
gtatgtaatttagataaaagctatgtgcacagtgttaagtttgttta---gcttctaatattttgccatca--ctttgcagACTGCTGCTCATGATGGTGTCAAGCTTTGGGATCTTCGGAAATTAAGAAATTTTAGGACCTTCTCTCCCTATGATTCAGATACGCCAACAAATACTG

upper sequence: GLYMA20G21330.1 (Glycine max), 3'ss of exon 14
lower sequence: Vv05s0049g01840.t01 (Vitis vinifera), 3'ss of exon 14
gtatgtgagaaaatgtaactagtaaagtat----gatgattgtttatacagtattcttattgtactcttaaatttgacagACTGCTGCTCATGATGGTGTTAAGCTTTGGGATCTACGTAAACTGAAGAACTTCAGGAATTTTGCTCCATATGATTCGGAAACACCAACGAGCTCCG
   | || |      ||| ||| |  ||||    || ||      ||||| |  |  | || ||  ||| |  ||   ||||||| |||||||||||||||||||| ||||||||||| ||| ||| ||| ||| |||  ||| | |||||||||||  | ||| |||| | ||| |
--gtatgtgttttcctaattagaagtgtatatgtgaggaagtgacatacatttctgattttttatgcttgatgtttttagACTGCAGCTCATGATGGTGTTAAGCTGTGGGATCTACGAAAATTGAGGAATTTCCGGACCTTTACACCATATGATTCAAATACAGCAACAAACTCTG

upper sequence: GLYMA20G21330.1 (Glycine max), 3'ss of exon 14
lower sequence: PP1S14_250V6.2 (Physcomitrella patens), 3'ss of exon 14
----------------gtatgtgagaa--aatgtaactagtaaagtatgatgattgtttatacag---tattcttattgtactcttaaatttga---cagACTGCTGCTCATGATGGTGTTAAGCTTTGGGATCTACGTAAACTGAAGAACTTCAGGAATTTTGCTCCATATGATTCGGAAACACCAACGAGCTCCG
                |  ||  |  |    || |  |||    ||||     ||| || | ||    || |||  |||      |  ||||     ||||||||||| || ||||| |||||||| |||||||| || ||  ||||||||||| |    ||||| || || ||     | |||| ||| |   | |
ttcgaagccaagggtagcttggtattatcgttgaagttagccttgtatatgccttggttttgcaaccttagtctacttgctgatgtggatttttttccagACTGCTGCACAAGATGGAGTTAAGCTGTGGGATCTGCGCAAGTTGAAGAACTTCCGTTCCTTTGCACCTTACGACAGTAACACACTAACAAATACAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207779928|gb|GD753949.1|GD753949
EST:     CTGGGCCAGTAACTGCCATATCTTTCNCTGAGAATGGATACTTCCTTGCG                         ACTGCTGCTCATGATGGTGTTAAGCTTTGGGATCTACGTAAACTGAAGAAC
genomic: CTGGGCCAGTAACTGCCATATCTTTCTCTGAGAATGGATACTTCCTTGCGgtatgtgaga ... aatttgacagACTGCTGCTCATGATGGTGTTAAGCTTTGGGATCTACGTAAACTGAAGAAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaaagtatgatgattgtttatacagtattcttattgtactcttaaatttgacagACTGCTGCTCATGATGGTGTTAAGCTTTGGGATCTACGTAAACTGAAGAACTTCAGGAATTTTGCTCCATATGATTCGGAAACACCAACGAGCTCCG
             attgtttata  TA-rich tract