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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatcatacttactctttataaagttgatatctgcaatttccttatgattgtcatcaataacatttgtgctggtgttgatcgtagGTTATTCATATAGATCCCAACAACAAAGAAGAGATGGGATTTTGGGAAGTAAATAACAGCAATGTTGCTCTCATGGCAAAAAATAACTTTGCAGTTGACA

Basic information

species Glycine max
transcript GLYMA19G39560.1
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207761857|gb|GD732478.1|GD732478
EST:     TTGAAAACNTGCTTGCTGCAGCTCATGCATTATATGATCCCAANAGAACA                         GTTATTCATATAGATCCCAACAACAAAGGAGAGATGGGATTTTGG
genomic: TTGAAAACATGCTTGCTGCAGCTCATGCATTATATGATCCCAACAGAACAgtaatcatac ... ttgatcgtagGTTATTCATATAGATCCCAACAACAAAGAAGAGATGGGATTTTGG
EST: gi|6666945|gb|AW278404.1|AW278404
EST:     TTGAAAACATGCTTGCTGCAGCTCATGCATTATATGATCCCAACAGAACA                         GTTATTCATATAGATCCCAACAACAAAGAAGAGATGGGATTTTGGGAAGTA
genomic: TTGAAAACATGCTTGCTGCAGCTCATGCATTATATGATCCCAACAGAACAgtaatcatac ... ttgatcgtagGTTATTCATATAGATCCCAACAACAAAGAAGAGATGGGATTTTGGGAAGTA
EST: gi|22522561|gb|BU081372.1|BU081372
EST:     TTGAAAACATGCTTGCTGCAGCTCATGCATTATATGATCCCAACAGAACA                         GTTATTCATATAGATCCCAACAACAAAGAAGAGATGGGATTTTGGGAAGTA
genomic: TTGAAAACATGCTTGCTGCAGCTCATGCATTATATGATCCCAACAGAACAgtaatcatac ... ttgatcgtagGTTATTCATATAGATCCCAACAACAAAGAAGAGATGGGATTTTGGGAAGTA
EST: gi|6482954|gb|AW202220.1|AW202220
EST:     TGAAA-CATGCTTGCTTGCA-CTCATGCATTATATGATCCCCACAGAACA                         GTTATTCATATAGATCCCAACACCAAAGAGGAGATGGGATTTTGGGAA
genomic: -GAAAACATGCTTGCT-GCAGCTCATGCATTATATGATCCCAACAGAACAgtaatcatac ... ttgatcgtagGTTATTCATATAGATCCCAACAACAAAGAAGAGATGGGATTTTGGGAA
EST: gi|14125998|gb|BG790436.1|BG790436
EST:     TTGAAAACATGCTCGCTGCAGCTCATGCATTATATGATCCCAACAGAACA                         GTTATTCATATAGATCCCAACAACAAAGAAGAGATGGGATTTTGGGAAGTA
genomic: TTGAAAACATGCTTGCTGCAGCTCATGCATTATATGATCCCAACAGAACAgtaatcatac ... ttgatcgtagGTTATTCATATAGATCCCAACAACAAAGAAGAGATGGGATTTTGGGAAGTA
EST: gi|22933940|gb|BU551079.1|BU551079
EST:     TTGAAAACATGCTTGCTGCAGCTCATGCATTATATGATCCCAACAGAACA                         GTTATTCATATAGATCCCAACAACAAAGAAGAGATGGGATTTTGGGAAGTA
genomic: TTGAAAACATGCTTGCTGCAGCTCATGCATTATATGATCCCAACAGAACAgtaatcatac ... ttgatcgtagGTTATTCATATAGATCCCAACAACAAAGAAGAGATGGGATTTTGGGAAGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgcaatttccttatgattgtcatcaataacatttgtgctggtgttgatcgtagGTTATTCATATAGATCCCAACAACAAAGAAGAGATGGGATTTTGGGAAGTAAATAACAGCAATGTTGCTCTCATGGCAAAAAATAACTTTGCAGTTGACA
                          aataacattt  TA-rich tract