1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...ggactattcctactaacaaaaatttggatgctgcttgtcttgctttttggttattttatgacttgttttgctattaacttggtttacacgtctgcattagGTGGGGTTTTCTATCTCGTGCTGGGCTGTGGGATAAAAGCCACTTGATGAGACAAATTGAGAA
species | Glycine max |
transcript | GLYMA17G04580.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: GAGAAAATTGCTCCAATGCTGGAGGCAGATGGGGAGCTCTTCAATTCAAG GTGGGGTTTTCTATCTCGTGCTGGGCTGTGGGATAAAAGCCACTTGATGAGEST: gi|298169844|gb|HO018468.1|HO018468
genomic: GAGAAAATTGCTCCAATGCTGGAGGCAGATGGGGAGCTCTTCAATTCAAGgtaagttcaa ... tctgcattagGTGGGGTTTTCTATCTCGTGCTGGGCTGTGGGATAAAAGCCACTTGATGAG
EST: GAGAAAATTGCTCCAATGCTGGAGGCAGATGGGGAGCTCTTCAATTCAAG GTGGGGTTTTCTATCTCGTGCTGGGCTGTGGGATAAAAGCCACCTGATGAGEST: gi|58022071|gb|CX708812.1|CX708812
genomic: GAGAAAATTGCTCCAATGCTGGAGGCAGATGGGGAGCTCTTCAATTCAAGgtaagttcaa ... tctgcattagGTGGGGTTTTCTATCTCGTGCTGGGCTGTGGGATAAAAGCCACTTGATGAG
EST: TTCAATTCAAG GTGGGGTTTTCTATCTCGTGCTGGGCTGTGGGATAAAAGCCACTTGATGAG
genomic: TTCAATTCAAGgtaagttcaa ... tctgcattagGTGGGGTTTTCTATCTCGTGCTGGGCTGTGGGATAAAAGCCACTTGATGAG
tttggttattttatgacttgttttgctattaacttggtttacacgtctgcattagGTGGGGTTTTCTATCTCGTGCTGGGCTGTGGGATAAAAGCCACTTGATGAGACAAATTGAGAA
tattaac putative branch site (score: 1)
ttattttatgactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggactattcctactaacaaaaatttggatgctgcttgtcttgctttttggttattttatgacttgttttgctattaacttggtttacacgtctgcattagGTGGGGTTTTCTATCTCGTGCTGGGCTGTGGGATAAAAGCCACTTGATGAGACAAATTGAGAA
- - - - - - - aacaaaa
- - - - - - - - - - - - -ggatgct
- - - - - - - - - - - - - - - - gcttgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgacttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttacacg