1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...tttaactctttggccttctttcacatttcaaaacctctcattttcttcttttttcagtagcacacattggtgaccatttaattattatcatttcctgcagATGTGGTCCAAAATGTATCTCAGGGTGTCAGAGAG
species | Glycine max |
transcript | GLYMA16G10820.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: TTGTTTTCTTGGCTTGACTTTAGGTGTAAAGCCCAGTGTTTCAAACTTAG ATGTGGTCCAAAATGTATCTCAGGGTGTCAGAGAGEST: gi|31307289|gb|CD392492.1|CD392492
genomic: TTGTTTTCTTGGCTTGACTTTAGGTGTAAAGCCCAGTGTTTCAAACTTAGgtaaatgcaa ... tttcctgcagATGTGGTCCAAAATGTATCTCAGGGTGTCAGAGAG
EST: TTGTTTTCTTGGCTTGACTTTAGGTGTAAAGCCCAGTGTTTCAAACTTAG ATGTGGTCCNAAATGTATCTCAGGGTGTCAGAGAGEST: gi|31475258|gb|CD417286.1|CD417286
genomic: TTGTTTTCTTGGCTTGACTTTAGGTGTAAAGCCCAGTGTTTCAAACTTAGgtaaatgcaa ... tttcctgcagATGTGGTCCAAAATGTATCTCAGGGTGTCAGAGAG
EST: TTGTTTTCTTGGCTTGACTTTAGGTGTAAAGCCCAGTGTTTCAAACTTAG ATGTGGTCCAAAATGTATCTCAGGGTGTCAGAGAG
genomic: TTGTTTTCTTGGCTTGACTTTAGGTGTAAAGCCCAGTGTTTCAAACTTAGgtaaatgcaa ... tttcctgcagATGTGGTCCAAAATGTATCTCAGGGTGTCAGAGAG
ttcttttttcagtagcacacattggtgaccatttaattattatcatttcctgcagATGTGGTCCAAAATGTATCTCAGGGTGTCAGAGAG
atttaat putative branch site (score: 4)
tcatttcct putative PPT
accatttaattattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttaactctttggccttctttcacatttcaaaacctctcattttcttcttttttcagtagcacacattggtgaccatttaattattatcatttcctgcagATGTGGTCCAAAATGTATCTCAGGGTGTCAGAGAG
- - - - - - gccttct
- - - - - - - - - - - - - - caaaacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggtgac