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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttttcaagctgtgttactttgataagaaaccaataagttcttacagctgttctgtacagtcacaaactgagaattttgattaactgtagTCTAGCAGCAGCTATGCTTCTTTTGAAGATGCTTCTTCAAGTGGAACTGTTGTTTTACGTGGCCAGCATGATGAGTCTGATTCTCCACAGACACCAAGGT

Basic information

species Glycine max
transcript GLYMA12G35510.1
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G35510.1 (Glycine max), 3'ss of exon 14
lower sequence: AT3G15220.1 (Arabidopsis thaliana), 3'ss of exon 15
gtatttttcaagctgtgttactttgataagaaaccaataagttcttacagctgttctgtacagtcacaaactgagaattttgattaactgtagTCTAGCAGCAGCTATGCTTCTTTTGAAGATGCTTCTTCAAGTGGAACTGTTGTTTTACGTGGCCAGCATGATGAGTCTGATTCTCCACAGACACCAAGGT
    | |  ||  | ||  || ||  ||| |    |   ||   ||| |   |  |||     | | ||| |||     ||  |    ||||||||||| |||| |||||  ||||||| ||||||||  ||||||||||||||||| | ||||| ||| | ||||| ||||  || || |  || || |  |
---gtatgaaatttctggcaccttcttaacatcttatacagaaatta-attaggcctggtgtattataaa-tgactccatttctactttgtagTCTAGCGGCAGGTATGCAGCTTTTGATGATGCTTCAGCAAGTGGAACTGTTGTTGTCCGTGGACAGTACGATGACTCTGGATCACCTCGAACCCCGAAAT

upper sequence: GLYMA12G35510.1 (Glycine max), 3'ss of exon 14
lower sequence: Vv19s0014g02310.t01 (Vitis vinifera), 3'ss of exon 15
----------gtatttttcaagctgtgttactttgataagaaaccaat-aagttcttacagctgttctgta----cagtcacaaactga---gaattttgattaac--tgtagTCTAGCAGCAGCTATGCTTCTTTTGAAGATGCTTCTTCAAGTGGAACTGTTGTTTTACGTGGCCAGCATGATGAGTCTGATTCTCCACAGACACCAAGGT
          || || ||||     |   | | | |||   |   ||| |||||  || | || || ||       || |    |||     | ||||| |    |  ||||||||||||  |  ||||||||| |||| ||||||||| | ||||| ||||||||| | ||| | || |||||||| ||||||||||| |  || |||| ||
gtatgtgactgtgttgttcatatgataaaaatataatacttagtaaatgaagtttctatatcttttgtgcggtgctagcccttgacttgattgcatttttacatgccatgtagTCTAGCAATACATATGCTTCTCTTGAGGATGCTTCTACCAGTGGCACTGTTGTTATTCGTAGTCATCATGATGATTCTGATTCTCCTCGAACGCCAAAGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagttcttacagctgttctgtacagtcacaaactgagaattttgattaactgtagTCTAGCAGCAGCTATGCTTCTTTTGAAGATGCTTCTTCAAGTGGAACTGTTGTTTTACGTGGCCAGCATGATGAGTCTGATTCTCCACAGACACCAAGGT
                                           gattaac  putative branch site (score: 2)
                                   agaattttgattaa  TA-rich tract