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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcagttttgtgctatctttagtcacattaatgaagcttgtctttgtataaaaatcatgtttctcaagtgtgtgcaaaatgtatctattaaatatttacagGTATTAGATTTTTTCAATAGTCGTATGGATGCTCAAAGAGAGGATGGTGACTGGTCAGTCCACGAAGTGCTACAAGTCATAATTGTCAATTGTCGTTCTT

Basic information

species Glycine max
transcript GLYMA10G38920.2
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G38920.2 (Glycine max), 3'ss of exon 14
lower sequence: Vv05s0020g04100.t01 (Vitis vinifera), 3'ss of exon 14
-------------------------------------------------------------------------tcagtttt--gtgctatctttagtcacattaatgaagcttgtctttgtataaaaatcatgt----ttctcaagtgtgtgca--aaatgtatctattaaatatttac-----agGTATTAGATTTTTTCAATAGTCGTATGGATGCTCAAAGAGAGGATGGTGACTGGTCAGTCCACGAAGTGCTACAAGTCATAATTGTCAATTGTCGTTCTT
                                                                          ||| |||  ||| ||  | || | ||       |||||| |||| ||||  ||||  | |    | ||    |  ||||   | |  ||| |  |   |  |||      ||||||||||||||||||||||||| |||||||| ||| ||  | ||||||  ||||||||  |  |||| || |||||||||||  |||| ||  | ||||
gtgagctccagattttttgtttaaaccatggtttttatttatctcttttacaaatcttgcaatttatcaaagagcaggtttaggtggtagttgtaataactgcctataagctt-tcttagtatctaaattttatagtatgcttgtctacgtgcttcagaattatatgatgcctgcttattttttagGTATTAGATTTTTTCAATAGTCGCATGGATGCCCAAGGAATGAATGGTGGATGGTCAGTTGAGAAAGTTCTCCAAGTCATAATCATCAACTGCAGATCTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151393515|gb|EV263390.1|EV263390
EST:     GTCAACTGAATTGCACATTTATACTGACTTCTTGAGGCTTGTACTAGAAATAATAAATGCAATCCTGACTTATGCACTACCTCGGAATCCCGAG
genomic: GTCAACTGAATTGCACATTTATACTGACTTCTTGAGGCTTGTACTAGAAATAATAAATGCAATCCTGACTTATGCACTACCTCGGAATCCCGAG
EST: gi|9898564|gb|BE607532.1|BE607532
EST:     GTCAACTGAATTGCACATTTATACTGACTTCTTGAGGCTTGTACTAGAAATAATAAATGCAATCCTGACTTATGCACTACCTCGGAATCCCGAG
genomic: GTCAACTGAATTGCACATTTATACTGACTTCTTGAGGCTTGTACTAGAAATAATAAATGCAATCCTGACTTATGCACTACCTCGGAATCCCGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tataaaaatcatgtttctcaagtgtgtgcaaaatgtatctattaaatatttacagGTATTAGATTTTTTCAATAGTCGTATGGATGCTCAAAGAGAGGATGGTGACTGGTCAGTCCACGAAGTGCTACAAGTCATAATTGTCAATTGTCGTTCTT
                             aaaatgtatctattaa  TA-rich tract