1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...ctgttcaaatatgacctgaaattgatatagactagtaggattgttcatatgatctccatttttgtaactattaaaagttctgagtgatcattatttgcagGTAAGAACTGAAGCAAGGAAGGTTCATGATCTCTTCTTTGATATTTTGAAAATTGCGTTTCCGGATACAGACTTTGTAGAAGCAAGAGGTGCACTATCTT
species | Glycine max |
transcript | GLYMA09G39380.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: TACAGCTCATGTTGAGGGGCGCAATGCATTTCTATGGATACTCATATGAG GTAAGAACTGAAGCATGGAAGGTTCATGATCTCTTCTTTGATGTTTAGAAAEST: gi|9439840|gb|BE440353.1|BE440353
genomic: TACAGTTCATGTTGAGGGGCGCAATGCATTTCTATGGATACTCATATGAGgtgaaatttc ... ttatttgcagGTAAGAACTGAAGCAAGGAAGGTTCATGATCTCTTCTTTGATATTTTGAAA
EST: TACAGTTCATGTTGAGGGGCGCAATGCATTTCTATGGATACTCATATGAG GTAAGAACTGAAGCAAGGAAGGTTCATGATCTCTTCTTTGATATTTTGAAAEST: gi|151395857|gb|EV265734.1|EV265734
genomic: TACAGTTCATGTTGAGGGGCGCAATGCATTTCTATGGATACTCATATGAGgtgaaatttc ... ttatttgcagGTAAGAACTGAAGCAAGGAAGGTTCATGATCTCTTCTTTGATATTTTGAAA
EST: TACAGTTCATGTTGAGGGGCGTAATGCATTTCTATGGATACTCATATGAG GTAAGAACTGAAGCAAGGAAGGTTCATGATCTCTTCTTTGATATTTTGAAA
genomic: TACAGTTCATGTTGAGGGGCGCAATGCATTTCTATGGATACTCATATGAGgtgaaatttc ... ttatttgcagGTAAGAACTGAAGCAAGGAAGGTTCATGATCTCTTCTTTGATATTTTGAAA
catatgatctccatttttgtaactattaaaagttctgagtgatcattatttgcagGTAAGAACTGAAGCAAGGAAGGTTCATGATCTCTTCTTTGATATTTTGAAAATTGCGTTTCCGGATACAGACTTTGTAGAAGCAAGAGGTGCACTATCTT
ttgtaac putative branch site (score: 2)
atttttgtaactatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgttcaaatatgacctgaaattgatatagactagtaggattgttcatatgatctccatttttgtaactattaaaagttctgagtgatcattatttgcagGTAAGAACTGAAGCAAGGAAGGTTCATGATCTCTTCTTTGATATTTTGAAAATTGCGTTTCCGGATACAGACTTTGTAGAAGCAAGAGGTGCACTATCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - -acctgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgagtga