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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgactataattctaaattggcttaaatatctttttggtccttcaaatttggactaagtttgcttttgtccctcaaattttaaattgattttcttttcctgatttggaaatagtctacacttgatccttaatttgtgatctctttagtccctaataaagaccaaaagcgagctactcattatgcatccatgttcagGTGTTACGGGAGGAGGAATTTGCACCAGTGAAAAATGCAAATGGATCCAATGTTGACACTCCAGACAGTGCGAAACTACTTGTTCTTCGACTCCATACTC

Basic information

species Glycine max
transcript GLYMA08G09170.2
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G09170.2 (Glycine max), 3'ss of exon 14
lower sequence: LOC_Os08g10600.2 (Oryza sativa), 3'ss of exon 14
gtgactataattctaaattggcttaaatatctttttggtccttcaaatttggactaagtttgcttttgtccctcaaattttaaattgattttcttttcctgatttggaaatagtctacacttgatcc--ttaatttgtgatctctttagtccctaataaagaccaaaagcgagctactcattatgcatccatgttcagGTGTTACGGGAGGAGGAATTTGCACCAGTGAAAAATGCAAATGGATCCAATGTTGACACTCCAGACAGTGCGAAACTACTTGTTCTTCGACTCCATACTC
                                                                                                   ||| ||  || |       ||| | ||   ||||||  |||   |     |   |   ||||| |  |   |   |  |        ||     ||||| | ||  |||||||||||||||||||||| || ||||| |||||  | | |  ||| ||||| || ||||| | | || |  | || || || || |  |
------------------------------------------------------------------------------------------------gtttgacttcaaattcactattactagttctatttaattactgaaagcaaacatttattggaaagatctcattggtattgttggcacctaatgt---ttcagATTTTGAGGGAGGAGGAATTTGCACCAGTAAAGAATGCTAATGGTGCAACTTATGATACTCCTGATAGTGCCAGATTAATGCTGCTCCGCCTTCACAGCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208191545|gb|GD992781.1|GD992781
EST:     AGTTTATATTTGATGCATTTCCATATGCTCCTACGACTGCACTTTTTGAG                         GTGTTACGGGAGGAGGAATTTGCACCAGTGAAAAATGCAAATGGATCCAAT
genomic: AGTTTATATTTGATGCATTTCCATATGCTCCTACGACTGCACTTTTTGAGgtgactataa ... ccatgttcagGTGTTACGGGAGGAGGAATTTGCACCAGTGAAAAATGCAAATGGATCCAAT
EST: gi|254342038|gb|GR853175.1|GR853175
EST:     AGTTTATATTTGATGCATTTCCATATGCTCCTACGACTGCACTTTTTGAG                         GTGTTACGGGAGGAGGAATTTGCACCAGTGAAAAATGCAAATGGATCCAAT
genomic: AGTTTATATTTGATGCATTTCCATATGCTCCTACGACTGCACTTTTTGAGgtgactataa ... ccatgttcagGTGTTACGGGAGGAGGAATTTGCACCAGTGAAAAATGCAAATGGATCCAAT
EST: gi|4313957|gb|AI461076.1|AI461076
EST:     AGTTTATATTTGATGCATTTCCATATGCTCCTACAACTGCACTTTTTGAG                         GTGTTACGGGAGGAGGAATTTGCACCAGTGAAAAATGCAAATGGATCCAAT
genomic: AGTTTATATTTGATGCATTTCCATATGCTCCTACGACTGCACTTTTTGAGgtgactataa ... ccatgttcagGTGTTACGGGAGGAGGAATTTGCACCAGTGAAAAATGCAAATGGATCCAAT
EST: gi|8282791|gb|BE020352.1|BE020352
EST:     AGTTTATATTTGATGCATTTCCATATGCTCCTACGACTGCACTTTTTGAG                         GTGTTACGGGAGGAGGAATTTGCACCAGTGAAAAATGCAAATGGATCCAAT
genomic: AGTTTATATTTGATGCATTTCCATATGCTCCTACGACTGCACTTTTTGAGgtgactataa ... ccatgttcagGTGTTACGGGAGGAGGAATTTGCACCAGTGAAAAATGCAAATGGATCCAAT
EST: gi|193334482|gb|FK301730.1|FK301730
EST:     AGTTTATATTTGATGCATTTCCATATGCTCCTACGACTGCACTTTTTGAG                         GTGTTACGGGAGGAGGAATTTGCACCAGTGAAAAATGCAAATGGATCCAAT
genomic: AGTTTATATTTGATGCATTTCCATATGCTCCTACGACTGCACTTTTTGAGgtgactataa ... ccatgttcagGTGTTACGGGAGGAGGAATTTGCACCAGTGAAAAATGCAAATGGATCCAAT
EST: gi|298176684|gb|HO026805.1|HO026805
EST:     AGTTTATATTTGATGCATTTCCATATGCTCCTACGACTGCACTTTTTGAG                         GTGTTACGGGAGGAGGAATTTGCACCAGTGAAAAATGCAAATGGATCCAAT
genomic: AGTTTATATTTGATGCATTTCCATATGCTCCTACGACTGCACTTTTTGAGgtgactataa ... ccatgttcagGTGTTACGGGAGGAGGAATTTGCACCAGTGAAAAATGCAAATGGATCCAAT
EST: gi|151397105|gb|EV266978.1|EV266978
EST:     AGTTTATATTTGATGCATTTCCATATGCTCCTACAACTGCACTTTTTGAG                         GTGTTACGGGAGGAGGAATTTGCACCAGTGAAAAATGCAAATGGATCCAAT
genomic: AGTTTATATTTGATGCATTTCCATATGCTCCTACGACTGCACTTTTTGAGgtgactataa ... ccatgttcagGTGTTACGGGAGGAGGAATTTGCACCAGTGAAAAATGCAAATGGATCCAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttagtccctaataaagaccaaaagcgagctactcattatgcatccatgttcagGTGTTACGGGAGGAGGAATTTGCACCAGTGAAAAATGCAAATGGATCCAATGTTGACACTCCAGACAGTGCGAAACTACTTGTTCTTCGACTCCATACTC
       ccctaat  putative branch site (score: 3)
          taataaaga  TA-rich tract