Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttaattattttattgttggagagctatactctagaaatagtagttgcttgctaattgttgcctgatcttaaactttagGCAAGCCCGCGTATTCGCTTCAACAAGGATGGAACTCTTTTAGCTGTCTCTGCAAATGAGAATGGAATTAAAATTTTAGCCAATGGGGATGGTATTCGCT

Basic information

species Glycine max
transcript GLYMA07G03180.1
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G03180.1 (Glycine max), 3'ss of exon 14
lower sequence: Vv09s0002g08370.t01 (Vitis vinifera), 3'ss of exon 15
gtaagttaattattttattgt----tggagagctatactctagaaatagt---agttgcttg-----ctaattgttgcctgatcttaaactttagGCAAGCCCGCGTATTCGCTTCAACAAGGATGGAACTCTTTTAGCTGTCTCTGCAAATGAGAATGGAATTAAAATTTTAGCCAATGGGGATGGTATTCGCT
||||||| ||||  ||   ||    || |     | | | |  ||| | |   | | || |       | ||  |||| |  || | |  | ||||||||||| || ||||||||||||||||| || ||||| || ||||| ||||| |||||||||   |||||||| || || |||   |||||| || | |
gtaagttgattaaattgaagtgaaatgtaagaaaacatttttaaaacaatgcaaatggcctaaatcattcatctttgcttt-tcatgatttctagGCAAGCCCACGCATTCGCTTCAACAAGGACGGCACTCTCTTGGCTGTTTCTGCTAATGAGAATTCGATTAAAATCTTGGCTAATTCTGATGGTCTTAGAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8284131|gb|BE021690.1|BE021690
EST:     TGGATAATGTTCAGCTTTTGACAACTGTTGATGCTGATGGGGGTCTCCCT                         GCAAGCCCGCGTATTCGCTTCAACAAGGATGGAACTCTTTTAGCTGTCTCT
genomic: TGGATAATGTTCAGCTTTTGACAACTGTTGATGCTGATGGGGGTCTCCCTgtaagttaat ... taaactttagGCAAGCCCGCGTATTCGCTTCAACAAGGATGGAACTCTTTTAGCTGTCTCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctatactctagaaatagtagttgcttgctaattgttgcctgatcttaaactttagGCAAGCCCGCGTATTCGCTTCAACAAGGATGGAACTCTTTTAGCTGTCTCTGCAAATGAGAATGGAATTAAAATTTTAGCCAATGGGGATGGTATTCGCT
                                            ttaaacttta  TA-rich tract