1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtactcaagaatcaggacactttttactaattaccattttcatgtttaaaaatgatgaatggcttatcccgttgttatacattggtagGTAATTGTTACGGAAGTCTTGGGTGGTGGTAAATTCTATGTTCAGACAGTTGGAGATCAAAAGATTGCATCCATTCAGCAACAGCTTGCTTCTTTGAACC
species | Glycine max |
transcript | GLYMA06G17050.4 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: AAGTATCTAATGGTGCAGCAGTTGAGAACAAGCAGCAAGAAGTACTTAAG GTAATTGTTACGGAAGTCTTGGGTGGTGGTAAATTCTATGTTCAGACAGTTEST: gi|51336882|gb|CO980748.1|CO980748
genomic: AAGTATCTAATGGTGCAGCAGTTGAGAACAAACAGCAAGAAGTACTTAAGgtactcaaga ... acattggtagGTAATTGTTACGGAAGTCTTGGGTGGTGGTAAATTCTATGTTCAGACAGTT
EST: CAGCAAGAAGTACTTAAG GTAATTGTTACGGAAGTCTTGGGTGGTGGTAAATTCTATGTTCAGACAGTTEST: gi|193321728|gb|FK287334.1|FK287334
genomic: CAGCAAGAAGTACTTAAGgtactcaaga ... acattggtagGTAATTGTTACGGAAGTCTTGGGTGGTGGTAAATTCTATGTTCAGACAGTT
EST: CAGTTGAGAACAAACAGCAAGAAGTACTTAAG GTAATTGTTACGGAAGTCTTGGGTGGTGGTAAATTCTATGTTCAGACAGTTEST: gi|254336635|gb|GR842814.1|GR842814
genomic: CAGTTGAGAACAAACAGCAAGAAGTACTTAAGgtactcaaga ... acattggtagGTAATTGTTACGGAAGTCTTGGGTGGTGGTAAATTCTATGTTCAGACAGTT
EST: AAGTATCTAATGGTGCAGCAGTTGAGAACAAACAGCAAGAAGTACTTAAG -TAATTGTTACGGAAGTCTTGGGTGGTG-TAAATTCTATGT
genomic: AAGTATCTAATGGTGCAGCAGTTGAGAACAAACAGCAAGAAGTACTTAAGgtactcaaga ... acattggtagGTAATTGTTACGGAAGTCTTGGGTGGTGGTAAATTCTATGT
ccattttcatgtttaaaaatgatgaatggcttatcccgttgttatacattggtagGTAATTGTTACGGAAGTCTTGGGTGGTGGTAAATTCTATGTTCAGACAGTTGGAGATCAAAAGATTGCATCCATTCAGCAACAGCTTGCTTCTTTGAACC
tttaaaaatgatgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactcaagaatcaggacactttttactaattaccattttcatgtttaaaaatgatgaatggcttatcccgttgttatacattggtagGTAATTGTTACGGAAGTCTTGGGTGGTGGTAAATTCTATGTTCAGACAGTTGGAGATCAAAAGATTGCATCCATTCAGCAACAGCTTGCTTCTTTGAACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA