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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgtaaactttgtttagcatttgggcattatcattgaatgaaatatagtcaaagtattgattccttgtcctttcttatcttgagtagAAAACAATGGATCGGTTTATCCATCAGTAACTGCATTTGAGAGCAGCTCCTTGAGGTTGACATTCAATTTCTCAAAACAACCAGGAAACCCACAAACAAC

Basic information

species Glycine max
transcript GLYMA02G03800.1
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21888840|gb|BQ742053.1|BQ742053
EST:     ATTTATTGGATGGTTTTGCCCCCAGCCCGCCAACAG                         AAAACAATGGATCGGTTTATCCATCAGTAACTGCATTTGAGAGCAGCTCCT
genomic: ATTTATTGGATGGTTTTGCCCCCAGCCCGCCAACAGgttgtaaact ... tcttgagtagAAAACAATGGATCGGTTTATCCATCAGTAACTGCATTTGAGAGCAGCTCCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgaatgaaatatagtcaaagtattgattccttgtcctttcttatcttgagtagAAAACAATGGATCGGTTTATCCATCAGTAACTGCATTTGAGAGCAGCTCCTTGAGGTTGACATTCAATTTCTCAAAACAACCAGGAAACCCACAAACAAC
                      tattgat  putative branch site (score: 3)
                            ttccttgtcctttctt  CT-rich tract
     atgaaatata  TA-rich tract