1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tttaagtagttgtgcgactttaaggacaacctttaaattaccttataattatattgttgattgagttggtgttgatactatatgattaaatttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTTTACAAACGCTTTCTCGCTGGATTGCCAATATGATATAGAGGAAAAGAGA
species | Glycine max |
transcript | GLYMA16G09320.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTTEST: gi|193556860|gb|FK512321.1|FK512321
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
EST: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTTEST: gi|193500776|gb|FK465357.1|FK465357
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
EST: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTTEST: gi|208269880|gb|GE073086.1|GE073086
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
EST: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTTEST: gi|193366244|gb|FK330231.1|FK330231
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
EST: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTTEST: gi|151408190|gb|EV277998.1|EV277998
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
EST: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTTEST: gi|193477757|gb|FK442304.1|FK442304
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
EST: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTTEST: gi|208113525|gb|GD911164.1|GD911164
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
EST: ATACGACAAAAATCTTACTTTTCTGACCGTAAAG GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTTEST: gi|193730092|gb|FK663078.1|FK663078
genomic: ATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
EST: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTTEST: gi|208113512|gb|GD911151.1|GD911151
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
EST: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG GGATCTGGGCATACTGTTCCGGAATAEST: gi|207833761|gb|GD808070.1|GD808070
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATA
EST: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTTEST: gi|208284749|gb|GE085563.1|GE085563
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
EST: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTTEST: gi|193560343|gb|FK516794.1|FK516794
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
EST: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTTEST: gi|193460123|gb|FK427074.1|FK427074
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
EST: TACACAAGGATACGACAAAAATCTTACTTCTCTGACCGTAAAG GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTTEST: gi|208145926|gb|GD943565.1|GD943565
genomic: TACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
EST: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTTEST: gi|254339690|gb|GR857815.1|GR857815
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
EST: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTTEST: gi|193647368|gb|FK587583.1|FK587583
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
EST: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTTEST: gi|193500358|gb|FK464379.1|FK464379
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
EST: GTATACACAGGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTTEST: gi|193685824|gb|FK626338.1|FK626338
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
EST: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTTEST: gi|193591126|gb|FK545587.1|FK545587
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
EST: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTTEST: gi|208198647|gb|GD998468.1|GD998468
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
EST: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTTEST: gi|192320379|gb|FK013469.1|FK013469
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
EST: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTTEST: gi|193450502|gb|FK412972.1|FK412972
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
EST: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG GGATCTGGGCATACTGTTCCGGAATATAAACCACEST: gi|208293881|gb|GE092538.1|GE092538
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCAC
EST: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTTEST: gi|207771851|gb|GD745622.1|GD745622
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
EST: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTTEST: gi|193637122|gb|FK579021.1|FK579021
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
EST: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG GGATCTGGGCATACTGTTCCGGAATAATAAAACCAACGAGAGGCATTGGACEST: gi|208156382|gb|GD956762.1|GD956762
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATA-TAAA-CCA-CGAGAGGCATTGGAC
EST: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTTEST: gi|208241186|gb|GE038728.1|GE038728
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
EST: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG GGATCTGGGCAEST: gi|208057167|gb|GD854258.1|GD854258
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCA
EST: CTTTTCTGACCGTAAAG GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTTEST: gi|193312336|gb|FK274314.1|FK274314
genomic: CTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
EST: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTTEST: gi|193439215|gb|FK409002.1|FK409002
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
EST: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTTEST: gi|193425096|gb|FK389419.1|FK389419
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
EST: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTTEST: gi|57574399|gb|CX547374.1|CX547374
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
EST: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTTEST: gi|193366247|gb|FK330234.1|FK330234
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
EST: GTTATTACTACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTTEST: gi|208230361|gb|GE031724.1|GE031724
genomic: G-TA-TAC-ACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGAC-TT
EST: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG GGTTCTGGGCATACTGTTCCGGAAEST: gi|57574752|gb|CX547727.1|CX547727
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAA
EST: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTTEST: gi|208050931|gb|GD848072.1|GD848072
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
EST: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTTEST: gi|207751726|gb|GD722627.1|GD722627
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
EST: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTTEST: gi|208156142|gb|GD952812.1|GD952812
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
EST: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTTEST: gi|193382457|gb|FK349042.1|FK349042
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
EST: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTTEST: gi|193445119|gb|FK409297.1|FK409297
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
EST: GTATACACAGGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTTEST: gi|193328739|gb|FK293499.1|FK293499
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
EST: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTTEST: gi|208080044|gb|GD876316.1|GD876316
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
EST: GTATACACAAGGATACGACAAAAAATCTTACTTTTCTGACCGTAAAG GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTTEST: gi|193656043|gb|FK606673.1|FK606673
genomic: GTATACACAAGGATACGAC-AAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
EST: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
taattatattgttgattgagttggtgttgatactatatgattaaatttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTTTACAAACGCTTTCTCGCTGGATTGCCAATATGATATAGAGGAAAAGAGA
tgttgat putative branch site (score: 4)
ttgatactatatgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttaagtagttgtgcgactttaaggacaacctttaaattaccttataattatattgttgattgagttggtgttgatactatatgattaaatttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTTTACAAACGCTTTCTCGCTGGATTGCCAATATGATATAGAGGAAAAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - -agttgtg
- - - - - - - - - - - - -acaacct
- - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtgttg