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...tgttaactatggctggtcaaagctatctgcatagaatgctaaaattaattcaatgatatttctaagggtgggctgacaagttcaatgtcttatcattcagGTCAAGCAACCTGGACTGGAGATGTCTACGGTTCAAAGTGAGCTTGACTTGTCATATGGACAACGGTATCAAGGAGTAACCATTCCTGAGGCTTATGAAC
species | Glycine max |
transcript | GLYMA16G06850.3 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: AGTTTGTTATCCGCCTACAGCCTTCAGAAGCTATTTACATGAAGCTTACG GTCAAGCAACCTGGACTGGAGATGTCTACGGTTCAAAGTGAGCTTGACTTGEST: gi|15661766|gb|BI699137.1|BI699137
genomic: AGTGTGTTATCCGCCTACAGCCTTCAGAAGCTATTTACATGAAGCTTACGgtgaggcaat ... tatcattcagGTCAAGCAACCTGGACTGGAGATGTCTACGGTTCAAAGTGAGCTTGACTTG
EST: TGTTATCCGCCTACAGCCTTCAGAAGCTATTTACATGAAGCTTACG GTCAAGCAACCTGGACTGGAGATGTCTACGGTTCAAAGTGAGCTTGACTTGEST: gi|37994251|gb|CF805997.1|CF805997
genomic: TGTTATCCGCCTACAGCCTTCAGAAGCTATTTACATGAAGCTTACGgtgaggcaat ... tatcattcagGTCAAGCAACCTGGACTGGAGATGTCTACGGTTCAAAGTGAGCTTGACTTG
EST: AGTTTGTTATCCGCCTACAGCCTTCAGAAGCTATTTACATGAAGCTTACG GTCAAGCAACCTGGACTGGAGATGTCTACGGTTCAAAGTGAGCTTGACTTGEST: gi|15815763|gb|BI788038.1|BI788038
genomic: AGTGTGTTATCCGCCTACAGCCTTCAGAAGCTATTTACATGAAGCTTACGgtgaggcaat ... tatcattcagGTCAAGCAACCTGGACTGGAGATGTCTACGGTTCAAAGTGAGCTTGACTTG
EST: AGTGTGTTATCCGCCTACAGCCTTCAGAAGGTATTTACATGAAACTTACG GTCAAGCAACCTGGACTGG-GAATGTCTACEST: gi|213594893|gb|DB977221.1|DB977221
genomic: AGTGTGTTATCCGCCTACAGCCTTCAGAAGCTATTTACATGAAGCTTACGgtgaggcaat ... tatcattcagGTCAAGCAACCTGGACTGGAGA-TGTCTAC
EST: GCCTACAGCCTTCAGAAGCTATTTACATGAAGCTTACG GTCAAGCAACCTGGATTTCAGATTAT-TACGGTTCAAAGTGAGCTTGACTTEST: gi|7925329|gb|AW831416.1|AW831416
genomic: GCCTACAGCCTTCAGAAGCTATTTACATGAAGCTTACGgtgaggcaat ... tatcattcagGTCAAGCAACCTGGACTGGAGA-TGTCTACGGTTCAAAGTGAGCTTGACTT
EST: AGTTTGTTATCCGCCTACAGCCTTCAGAAGCTATTTACATGAAGCTTACG GTCAAGCAACCTGGACTGGAGATGTCTACGGTTCAAAGTGAGCTTGACTTGEST: gi|19053614|gb|BM732281.1|BM732281
genomic: AGTGTGTTATCCGCCTACAGCCTTCAGAAGCTATTTACATGAAGCTTACGgtgaggcaat ... tatcattcagGTCAAGCAACCTGGACTGGAGATGTCTACGGTTCAAAGTGAGCTTGACTTG
EST: AGTGTGTTATCCGCCTACAGCCTTCAGAAGCTATTTACATGAAGCTTACG GTCAAGCAACCTGGACTGGAGATGTCTACGGTTCAAAGTGAGCTTGACTTGEST: gi|16343150|gb|BI968745.1|BI968745
genomic: AGTGTGTTATCCGCCTACAGCCTTCAGAAGCTATTTACATGAAGCTTACGgtgaggcaat ... tatcattcagGTCAAGCAACCTGGACTGGAGATGTCTACGGTTCAAAGTGAGCTTGACTTG
EST: AGTTTGTTATCCGCCTACAGCCTTCAGAAGCTATTTACATGAAGCTTACG GTCAAGCAACCTGGACTGGAGATGTCTACGGTTCAAAGTGAGCTTGACTTGEST: gi|58023690|gb|CX710431.1|CX710431
genomic: AGTGTGTTATCCGCCTACAGCCTTCAGAAGCTATTTACATGAAGCTTACGgtgaggcaat ... tatcattcagGTCAAGCAACCTGGACTGGAGATGTCTACGGTTCAAAGTGAGCTTGACTTG
EST: AGTGTGTTATCCGCCTACAGCCTTCAGAAGCTATTTACATGAAGCTTACG GTCAAGCAACCTGGACTGGAGATGTCTACGGTTCAAAGTGAGCTTGACTTGEST: gi|37995859|gb|CF807448.1|CF807448
genomic: AGTGTGTTATCCGCCTACAGCCTTCAGAAGCTATTTACATGAAGCTTACGgtgaggcaat ... tatcattcagGTCAAGCAACCTGGACTGGAGATGTCTACGGTTCAAAGTGAGCTTGACTTG
EST: AGTTTGTTATCCGCCTACAGCCTTCAGAAGCTATTTACATGAAGCTTACG GTCAAGCAACCTGGACTGGAGATGTCTACGGTTCANAGTGAGCTTGACTTGEST: gi|16346631|gb|BI972226.1|BI972226
genomic: AGTGTGTTATCCGCCTACAGCCTTCAGAAGCTATTTACATGAAGCTTACGgtgaggcaat ... tatcattcagGTCAAGCAACCTGGACTGGAGATGTCTACGGTTCAAAGTGAGCTTGACTTG
EST: AGTGTGTTATCCGCCTACAGCCTTCAGAAGCTATTTACATGAAGCTTACG GTCAAGCAACCTGGACTGGAGATGTCTACGGTTCAAAGTGAGCTTGACTTGEST: gi|37995462|gb|CF807051.1|CF807051
genomic: AGTGTGTTATCCGCCTACAGCCTTCAGAAGCTATTTACATGAAGCTTACGgtgaggcaat ... tatcattcagGTCAAGCAACCTGGACTGGAGATGTCTACGGTTCAAAGTGAGCTTGACTTG
EST: AGTTTGTTATCCGCCTACAGCCTTCAGAAGCTATTTACATGAAGCTTACG GTCAAGCAACCTGGACTGGAGATGTCTACGGTTCAAAGTGAGCTTEST: gi|192310376|gb|FK002256.1|FK002256
genomic: AGTGTGTTATCCGCCTACAGCCTTCAGAAGCTATTTACATGAAGCTTACGgtgaggcaat ... tatcattcagGTCAAGCAACCTGGACTGGAGATGTCTACGGTTCAAAGTGAGCTT
EST: AGTGTGTTATCCGCCTACAGCCTTCAGAAGCTATTTACATGAAGCTTACG GTCAAGCAACCTGGACTGGAGATGTCTACGGTTCAAAGTGAGCTTGACTTGEST: gi|33390426|gb|CA853621.1|CA853621
genomic: AGTGTGTTATCCGCCTACAGCCTTCAGAAGCTATTTACATGAAGCTTACGgtgaggcaat ... tatcattcagGTCAAGCAACCTGGACTGGAGATGTCTACGGTTCAAAGTGAGCTTGACTTG
EST: AGTGTGTTATCCGCCTACAGCCTTCAGAAGCTATTTACATGAAGCTTACG GTCAAGCAACCTGGACTGGAGATGTCTACGGTTCAAAGTGAGCTTGACTTGEST: gi|16346044|gb|BI971639.1|BI971639
genomic: AGTGTGTTATCCGCCTACAGCCTTCAGAAGCTATTTACATGAAGCTTACGgtgaggcaat ... tatcattcagGTCAAGCAACCTGGACTGGAGATGTCTACGGTTCAAAGTGAGCTTGACTTG
EST: AGTGTGTTATCCGCCTACAGCCTTCAGAAGCTATTTACATGAAGCTTACG GTCAAGCAACCTGGACTGGAGATGTCTACGGTTCAAAGTGAGCTTGACTTGEST: gi|37994259|gb|CF806005.1|CF806005
genomic: AGTGTGTTATCCGCCTACAGCCTTCAGAAGCTATTTACATGAAGCTTACGgtgaggcaat ... tatcattcagGTCAAGCAACCTGGACTGGAGATGTCTACGGTTCAAAGTGAGCTTGACTTG
EST: AGTTTGTTATCCGCCTACAGCCTTCAGAAGCTATTTACATGAAGCTTACG GTCAAGCAACCTGGACTGGAGATGTCTACGGTTCAAAGTGAGCTTGACTTGEST: gi|15661712|gb|BI699083.1|BI699083
genomic: AGTGTGTTATCCGCCTACAGCCTTCAGAAGCTATTTACATGAAGCTTACGgtgaggcaat ... tatcattcagGTCAAGCAACCTGGACTGGAGATGTCTACGGTTCAAAGTGAGCTTGACTTG
EST: AGTTTGTTATCCGCCTACAGCCTTCAGAAGCTATTTACATGAAGCTTACG GTCAAGCAACCTGGACTGGAGATGTCTACGGTTCAAAGTGAGCTTGACTTGEST: gi|58020056|gb|CX706798.1|CX706798
genomic: AGTGTGTTATCCGCCTACAGCCTTCAGAAGCTATTTACATGAAGCTTACGgtgaggcaat ... tatcattcagGTCAAGCAACCTGGACTGGAGATGTCTACGGTTCAAAGTGAGCTTGACTTG
EST: AGTGTGTTATCCGCCTACAGCCTTCAGAAGCTATTTACATGAAGCTTACG GTCAAGCAACCTGGACTGGAGATGTCTACGGTTCAAAGTGAGCTTGACTTGEST: gi|151395248|gb|EV265119.1|EV265119
genomic: AGTGTGTTATCCGCCTACAGCCTTCAGAAGCTATTTACATGAAGCTTACGgtgaggcaat ... tatcattcagGTCAAGCAACCTGGACTGGAGATGTCTACGGTTCAAAGTGAGCTTGACTTG
EST: AGTGTGTTATCCGCCTACAGCCTTCAGAAGCTATTTACATGAAGCTTACG GTCAAGCAACCTGGACTGGAGATGTCTACGGTTCAAAGTGAGCTTGACTTGEST: gi|7693442|gb|AW761534.1|AW761534
genomic: AGTGTGTTATCCGCCTACAGCCTTCAGAAGCTATTTACATGAAGCTTACGgtgaggcaat ... tatcattcagGTCAAGCAACCTGGACTGGAGATGTCTACGGTTCAAAGTGAGCTTGACTTG
EST: AGTGTGTTATCCGCCTACAGCCTTCAGAAGCTATTTACATGAAGCTTACG GTCAAGCAACCTGGACTGGAGATGTCTACGGTTCAAAGTGAGCTTGACTTGEST: gi|37994622|gb|CF806296.1|CF806296
genomic: AGTGTGTTATCCGCCTACAGCCTTCAGAAGCTATTTACATGAAGCTTACGgtgaggcaat ... tatcattcagGTCAAGCAACCTGGACTGGAGATGTCTACGGTTCAAAGTGAGCTTGACTTG
EST: AGTTTGTTATCCGCCTACAGCCTTCAGAAGCTATTTACATGAAGCTTACG GTCAAGCAACCTGGACTGGAGATGTCTACGGTTCANAGTGAGCTTGACTTG
genomic: AGTGTGTTATCCGCCTACAGCCTTCAGAAGCTATTTACATGAAGCTTACGgtgaggcaat ... tatcattcagGTCAAGCAACCTGGACTGGAGATGTCTACGGTTCAAAGTGAGCTTGACTTG
taattcaatgatatttctaagggtgggctgacaagttcaatgtcttatcattcagGTCAAGCAACCTGGACTGGAGATGTCTACGGTTCAAAGTGAGCTTGACTTGTCATATGGACAACGGTATCAAGGAGTAACCATTCCTGAGGCTTATGAAC
ggctgac putative branch site (score: 3)
tcttatc putative PPT
aatgatatttctaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttaactatggctggtcaaagctatctgcatagaatgctaaaattaattcaatgatatttctaagggtgggctgacaagttcaatgtcttatcattcagGTCAAGCAACCTGGACTGGAGATGTCTACGGTTCAAAGTGAGCTTGACTTGTCATATGGACAACGGTATCAAGGAGTAACCATTCCTGAGGCTTATGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - -tggctgg
- - - - - - - - - - - - atctgca
- - - - - - - - - - - - - - - - -gaatgct
- - - - - - - - - - - - - - - - - - - - aaaattaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggtggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgacaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caatgtc