1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...atttagataatgcgattaagattatataatctctactgatttctactagaatttaccatataaaatatttgaggtacgttaaaaatattgatttttgcagGTAAGAACTGAAGCAAGGAAGGTTCATGATCTCTTTTTTGAGATCTTGAAAATCGCATTTCCTGACACGGACTTCCGAGATGCAAGAAGTGCACTTTCTT
species | Glycine max |
transcript | GLYMA16G03950.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TGCAGTTCATGTTGAAGAGTGCAATGCATTTTTATGGTTTTTCACATGAG GTAAGAACTGAAGCAAGGAAGGTTCATGATCTCTTTTTTGAGATCTTGAAAEST: gi|254331081|gb|GR842346.1|GR842346
genomic: TGCAGTTCATGTTGAAGAGTGCAATGCATTTTTATGGTTTTTCACATGAGgtgaggtttc ... atttttgcagGTAAGAACTGAAGCAAGGAAGGTTCATGATCTCTTTTTTGAGATCTTGAAA
EST: TGCAGTTCATGTTGAAGAGTGCAATGCATTTTTATGGTTTTTCACATGAG GTAAGAACTGAAGCAAGGAAGGTTCATGATCTCTTTTTTGAGATCTTGAAA
genomic: TGCAGTTCATGTTGAAGAGTGCAATGCATTTTTATGGTTTTTCACATGAGgtgaggtttc ... atttttgcagGTAAGAACTGAAGCAAGGAAGGTTCATGATCTCTTTTTTGAGATCTTGAAA
ctagaatttaccatataaaatatttgaggtacgttaaaaatattgatttttgcagGTAAGAACTGAAGCAAGGAAGGTTCATGATCTCTTTTTTGAGATCTTGAAAATCGCATTTCCTGACACGGACTTCCGAGATGCAAGAAGTGCACTTTCTT
tattgat putative branch site (score: 3)
tttttgc CT-rich tract
atttaccatataaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttagataatgcgattaagattatataatctctactgatttctactagaatttaccatataaaatatttgaggtacgttaaaaatattgatttttgcagGTAAGAACTGAAGCAAGGAAGGTTCATGATCTCTTTTTTGAGATCTTGAAAATCGCATTTCCTGACACGGACTTCCGAGATGCAAGAAGTGCACTTTCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - -tctactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaata