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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttcgcttttggtttagaaactttagagtgtgatgtgcttttatattattaccttgttctcattctattctgttttgcagATTTCACAACTGAACCTAACTTTTAAGGAGATTGTATACAACTACAGAAAGCAACCACATTGCAAAACACAAGTTTTTCGTAGTGTATTTGTTGATTGGT

Basic information

species Glycine max
transcript GLYMA15G36890.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G36890.1 (Glycine max), 3'ss of exon 13
lower sequence: Vv04s0008g02780.t01 (Vitis vinifera), 3'ss of exon 13
gtttcgcttttggt-ttagaaactttagagtgtgatgtgcttttatattattaccttgttctcattctattc---tgtttt-----gcagATTTCACAACTGAACCTAACTTTTAAGGAGATTGTATACAACTACAGAAAGCAACCACATTGCAAAACACAAGTTTTTCGTAGTGTATTTGTTGATTGGT
        |||| | ||||||||||  ||| || ||  | | ||  |  |||  ||| |  || |||| | |   ||||||     |||||| || ||| ||||||| || || | ||| ||  |  |||||||||| ||||| ||||| |||||  ||||| |||| |||||||| |||||||||||||
-------gtttgctgttagaaacttgtgagagttattggttgttcaaccattttcttttaatccttctttgcccatgtttttgcctgcagATCTCTCAAATGAACCTGACCTTCAGGGAAATAATTCACAACTACAGGAAGCAGCCACAATGCAAGCCACAAATTTTCCGTAGTGTGTTTGTTGATTGGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193603928|gb|FK555435.1|FK555435
EST:     ACCATCATATTGACCAAATCATCTTGTGTTGTTTCTATGGAGTTGCAAAG                         ATTTCACAACTGAACCTAACTTTTAAGGAGATTGTATACAACTACAGAAAG
genomic: ACCATCATATTGACCAAATCATCTTGTGTTGTTTCTATGGAGTTGCAAAGgtttcgcttt ... tgttttgcagATTTCACAACTGAACCTAACTTTTAAGGAGATTGTATACAACTACAGAAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagtgtgatgtgcttttatattattaccttgttctcattctattctgttttgcagATTTCACAACTGAACCTAACTTTTAAGGAGATTGTATACAACTACAGAAAGCAACCACATTGCAAAACACAAGTTTTTCGTAGTGTATTTGTTGATTGGT
                               ttctcattctattct  CT-rich tract
             ttttatattattacct  TA-rich tract