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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtaatttctctgaattattttatttttgacttatcttataatggatcttgtcacggagatggttttctatttttctcagGTCATGGCAGTCTCCCGGAGCAATATTTGCAACAATGGATTAGAGTCTATTTCCCGAGGGGGTGCTGTAATATATTATGCTTCCGTCTTCCTTTATTTTT

Basic information

species Glycine max
transcript GLYMA14G08860.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G08860.1 (Glycine max), 3'ss of exon 13
lower sequence: Vv18s0001g11060.t01 (Vitis vinifera), 3'ss of exon 14
gtgagtaatttctctgaattattttatttttgacttatcttataatggatcttgtcacggagatggttttctatttttctcagGTCATGGCAGTCTCCCGGAGCAATATTTGCAACAATGGATTAGAGTCTATTTCCCGAGGGGGTGCTGTAATATATTATGCTTCCGTCTTCCTTTATTTTT
|| || |   | |||     |||  |||  |    ||     | ||     |||  |   ||     ||       ||||||||||||||| ||  || ||||||| || ||||| || ||| |   |||  | ||| ||||||||||||  ||||| |||||||| |||||||| |||||||
gttagaatgctttct---ccattccattcatataataataggtcatcttctttgctatt-agtaaacttgtggaaattctcagGTCATGGCTGTAACCAGGAGCAACATATGCAAGAAAGGAGTGTTGTCGCTCTCCAGAGGGGGTGCTGCTATATACTATGCTTCAGTCTTCCTCTATTTTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151401075|gb|EV270889.1|EV270889
EST:     TTTACCCGGCATGTATCAAGTATTTAATGTCAGCTTTTGATGTGCCAGAG                         GTCATGGCAGTCTCCCGGAGCAATATTTGCAACAATGGATTAGAGTCTATT
genomic: TTTACCCGGCATGTATCAAGTATTTAATGTCAGCTTTTGATGTGCCAGAGgtgagtaatt ... tttttctcagGTCATGGCAGTCTCCCGGAGCAATATTTGCAACAATGGATTAGAGTCTATT
EST: gi|254320056|gb|GR830972.1|GR830972
EST:     TTTACCCGGCATGTATCAAGTATTTAATGTCAGCTTTTGATGTGCCAGAG                         GTCATGGCAGTCTCCCGGAGCAATATTTGCAACAATGGATTAGAGTCTATT
genomic: TTTACCCGGCATGTATCAAGTATTTAATGTCAGCTTTTGATGTGCCAGAGgtgagtaatt ... tttttctcagGTCATGGCAGTCTCCCGGAGCAATATTTGCAACAATGGATTAGAGTCTATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgacttatcttataatggatcttgtcacggagatggttttctatttttctcagGTCATGGCAGTCTCCCGGAGCAATATTTGCAACAATGGATTAGAGTCTATTTCCCGAGGGGGTGCTGTAATATATTATGCTTCCGTCTTCCTTTATTTTT
 ttttgac  putative branch site (score: 3)
                                      ttttctatttttctc  putative PPT
                                      ttttctatttttct  TA-rich tract