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...taatatgtctgttataactaaatagcctatactactctcccagaatcccttgatatctgaaagatttgtgggaagactaaccatgctgtccgatctacagGAGAGACTTGGGGAACTACCTCCGAATGATGATCATCATCATAGGTCTGGCAGGAATGATCAGCATGTGGGTAATGACACTCAACAGAGTGGGCAGACAG
species | Glycine max |
transcript | GLYMA09G34170.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: GAATCAGGAGTGATTATGAGCAGCTACTCTCCGAGAATGCAGCTCTCAAG GAGAGACTTGGGGAACTACCTCCGAATGATGATCATCATCATAGGTCTGGCEST: gi|31473646|gb|CD415674.1|CD415674
genomic: GAATCAGGAGTGATTATGAGCAGCTACTCTCCGAGAATGCAGCTCTCAAGgtaatgttaa ... cgatctacagGAGAGACTTGGGGAACTACCTCCGAATGATGATCATCATCATAGGTCTGGC
EST: GAATCAGGAGTGATTATGAGCAGCTACTCTCCGAGAATGCAGCTCTCAAG GAGAGACTTGGGGAACTACCTCCGAATGATGATCATCATCGTAGGTCTGGEST: gi|20498852|gb|BQ273782.1|BQ273782
genomic: GAATCAGGAGTGATTATGAGCAGCTACTCTCCGAGAATGCAGCTCTCAAGgtaatgttaa ... cgatctacagGAGAGACTTGGGGAACTACCTCCGAATGATGATCATCATCATAGGTCTGG
EST: GAATCAGGAGTGATTATGAGCAGCTACTCTCCGAGAATGCAGCTCTCAAG GAGAGACTTGGGGAACTACCTCCGAATGATGATCATCATCATAGGTCTGGCEST: gi|254313915|gb|GR831544.1|GR831544
genomic: GAATCAGGAGTGATTATGAGCAGCTACTCTCCGAGAATGCAGCTCTCAAGgtaatgttaa ... cgatctacagGAGAGACTTGGGGAACTACCTCCGAATGATGATCATCATCATAGGTCTGGC
EST: GAATCAGGAGTGATTATGAGCAGCTACTCTCCGAGAATGCAGCTCTCAAG GAGAGACTTGGGGAACTACCTCCGAATGATGATCATCATCATAGGTCTGGC
genomic: GAATCAGGAGTGATTATGAGCAGCTACTCTCCGAGAATGCAGCTCTCAAGgtaatgttaa ... cgatctacagGAGAGACTTGGGGAACTACCTCCGAATGATGATCATCATCATAGGTCTGGC
tcccttgatatctgaaagatttgtgggaagactaaccatgctgtccgatctacagGAGAGACTTGGGGAACTACCTCCGAATGATGATCATCATCATAGGTCTGGCAGGAATGATCAGCATGTGGGTAATGACACTCAACAGAGTGGGCAGACAG
gactaac putative branch site (score: 1)
aaagattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taatatgtctgttataactaaatagcctatactactctcccagaatcccttgatatctgaaagatttgtgggaagactaaccatgctgtccgatctacagGAGAGACTTGGGGAACTACCTCCGAATGATGATCATCATCATAGGTCTGGCAGGAATGATCAGCATGTGGGTAATGACACTCAACAGAGTGGGCAGACAG
- - - gtctgtt
- - - - - - - - - - - - - - - - - ctctccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgtggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccatgct