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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ataaagtcaaaaagggtgttgataccacttttgtatcatataatctgcaaccttctagctgttttgtatatattgatatgtggattgattttatgtgcagTTATCATCTTGCAGAGAAGAAAATACCTTCCATACATGGATATACAATGGGATTAAAACTTGAACAGTTTATATTTGATGCATTTCCATATGCTCCTACG

Basic information

species Glycine max
transcript GLYMA08G09170.2
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G09170.2 (Glycine max), 3'ss of exon 13
lower sequence: LOC_Os04g52370.2 (Oryza sativa), 3'ss of exon 12
ataaagtcaaaaagggtgttgataccacttttgtatcatataatctgcaaccttctagctgttttgtatatat----tgatatgtggattgattttatgtgcagTTATCATCTTGCAGAGAAGAAAATACCTTCCATACATGGATATACAATGGGATTAAAACTTGAACAGTTTATATTTGATGCATTTCCATATGCTCCTACG
      |    |||   ||     |||  |||  | | |  || || || | |||   || || | | | ||     ||| || |  |    |||| ||| ||||||||||||||| |||||||| || |||||||| ||||| ||  ||||||| || || |||||||||| |||||| || || ||    ||  | ||  | 
---ctcttcctaagaaagtgagagccatgtttaaaac-tgcaagctccatcattcattctattgtatttgtagcacatgaaatttacaaaacttttgtgtccagTTATCATCTTGCTGAGAAGAAGATCCCTTCCATCCATGGGTACGCAATGGGCTTGAAGCTTGAACAGTATATATTCGACGCGTTCAGTTACTCCCCATCC

upper sequence: GLYMA08G09170.2 (Glycine max), 3'ss of exon 13
lower sequence: Vv01s0011g01420.t01 (Vitis vinifera), 3'ss of exon 12
ataaagtcaaaaagggtgttgataccacttttgtatcatataatctgcaaccttctagctgttttgtatatattgatatgtggattg-attttatgtgcagTTATCATCTTGCAGAGAAGAAAATACCTTCCATACATGGATATACAATGGGATTAAAACTTGAACAGTTTATATTTGATGCATTTCCATATGCTCCTACG
 |    |  ||    ||| |   |  | ||||     ||| |   | |||      | |    || |  ||||| || |      || ||| |  ||| ||||| ||||| ||||||||||||||  |||| |  || ||||| ||||||||||||||||| || ||||||||||||||||||||||||||||| ||| | 
-tcttatgcaattttgtggttgcatgatttttcatctataaatgtttcaattactcaaccacattttgaatattaatctacactctggattgtgagtgtagTTACCATCTAGCAGAGAAGAAAATCGCTTCAACCCACGGATACACAATGGGATTAAAACTAGAGCAGTTTATATTTGATGCATTTCCATATGCCCCTTCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208191545|gb|GD992781.1|GD992781
EST:     ACTCTGGATTTTCTGAACCAAGTGGCAAATGGCCTTGAAAAAGACAGCAT                         TTATCATCTTGCAGAGAAGAAAATACCTTCCATACATGGATATACAATGGG
genomic: ACTCTGGATTTTCTGAACCAAGTGGCAAATGGCCTTGAAAAAGACAGCATgtatgtgtgt ... ttatgtgcagTTATCATCTTGCAGAGAAGAAAATACCTTCCATACATGGATATACAATGGG
EST: gi|254342038|gb|GR853175.1|GR853175
EST:     ACTCTGGATTTTCTGAACCAAGTGGCAAATGGCCTTGAAAAAGACAGCAT                         TTATCATCTTGCAGAGAAGAAAATACCTTCCATACATGGATATACAATGGG
genomic: ACTCTGGATTTTCTGAACCAAGTGGCAAATGGCCTTGAAAAAGACAGCATgtatgtgtgt ... ttatgtgcagTTATCATCTTGCAGAGAAGAAAATACCTTCCATACATGGATATACAATGGG
EST: gi|4313957|gb|AI461076.1|AI461076
EST:     ACTCTGGATTTTCTGAATCAAGTGGCAAATGGCCTTGAAAAAGACAGCAT                         TTATCATCTTGCAGAGAAGAAAATACCTTCCATACATGGATATACAATGGG
genomic: ACTCTGGATTTTCTGAACCAAGTGGCAAATGGCCTTGAAAAAGACAGCATgtatgtgtgt ... ttatgtgcagTTATCATCTTGCAGAGAAGAAAATACCTTCCATACATGGATATACAATGGG
EST: gi|8282791|gb|BE020352.1|BE020352
EST:     GAAAAAGACAGCAT                         TTATCATCTTGCAGAGAAGAAAATACCTTCCATACATGGATATACAATGGG
genomic: GAAAAAGACAGCATgtatgtgtgt ... ttatgtgcagTTATCATCTTGCAGAGAAGAAAATACCTTCCATACATGGATATACAATGGG
EST: gi|208215335|gb|GE011090.1|GE011090
EST:     ACTCTGGATTTTCTGAACCAAGTGGCAAATGGCCTTGAAAAAGACAGCAT                         TTATCATCTTGCAGAAGAAAGAAAATAACCTT
genomic: ACTCTGGATTTTCTGAACCAAGTGGCAAATGGCCTTGAAAAAGACAGCATgtatgtgtgt ... ttatgtgcagTTATCATCTTGCAGA-GAA-GAAAATA-CCTT
EST: gi|298176684|gb|HO026805.1|HO026805
EST:     ACTCTGGATTTTCTGAACCAAGTGGCAAATGGCCTTGAAAAAGACAGCAT                         TTATCATCTTGCAGAGAAGAAAATACCTTCCATACATGGATATACAATGGG
genomic: ACTCTGGATTTTCTGAACCAAGTGGCAAATGGCCTTGAAAAAGACAGCATgtatgtgtgt ... ttatgtgcagTTATCATCTTGCAGAGAAGAAAATACCTTCCATACATGGATATACAATGGG
EST: gi|151397105|gb|EV266978.1|EV266978
EST:     ACTCTGGATTTTCTGAATCAAGTGGCAAATGGCCTTGAAAAAGACAGCAT                         TTATCATCTTGCAGAGAAGAAAATACCTTCCATACATGGATATACAATGGG
genomic: ACTCTGGATTTTCTGAACCAAGTGGCAAATGGCCTTGAAAAAGACAGCATgtatgtgtgt ... ttatgtgcagTTATCATCTTGCAGAGAAGAAAATACCTTCCATACATGGATATACAATGGG
EST: gi|254329705|gb|GR839258.1|GR839258
EST:     ACTCTGGATTTTCTGAATCAAGTGGCAA-TGGCCTTGAAAAAGACAGCAT                         TTATCATCTTGCAGAGAAGAAA-TACCTTCCATACATGGATATACA-TGGG
genomic: ACTCTGGATTTTCTGAACCAAGTGGCAAATGGCCTTGAAAAAGACAGCATgtatgtgtgt ... ttatgtgcagTTATCATCTTGCAGAGAAGAAAATACCTTCCATACATGGATATACAATGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcaaccttctagctgttttgtatatattgatatgtggattgattttatgtgcagTTATCATCTTGCAGAGAAGAAAATACCTTCCATACATGGATATACAATGGGATTAAAACTTGAACAGTTTATATTTGATGCATTTCCATATGCTCCTACG
                ttttgtatatattgat  TA-rich tract