Sequence
atgc intronic sequence ATGC exonic sequencegtaattcacttctctgtgaagaagatttcctcatgtttgccttattatagtaagacatgctaaactatatgtacttataatgttagtatttcaactactgtgtttgactattcctctgttagctgagtatcttgaaatccctaacttatattcttaatgaactattatgtttcagtattcttataattttctttttagGGTCCTGTGAATTATGTATGTCTCCATTGTGTTAAACCAAGTTTGAGGCCGCTGTCTATGGCTATGTCTACTGTTGCTATTCATATCTTTGGAGATGTAC
Basic information
species | Glycine max |
transcript | GLYMA07G30370.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G30370.1 (Glycine max), 3'ss of exon 13
lower sequence: LOC_Os04g44430.1 (Oryza sativa), 3'ss of exon 11
gtaattcacttctctgtgaagaagatttcctcatgtttgccttattatagtaagacatgctaaactatatgtacttataatgttagtatttcaactactgtgtttgactattcctctgttagctgagtatcttgaaatccctaa--cttatattcttaatgaactattatgtttcagtattcttataattttctttttagGGTCCTGTGAATTATGTATGTCTCCATTGTGTTAAACCAAGTTTGAGGCCGCTGTCTATGGCTATGTCTACTGTTGCTATTCATATCTTTGGAGATGTAC
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-------------------------------------------------------------------------------------------taa--acagtgctggtcaatgggaacggagggagtatatattgatttttctcatcctgatatgcatatctaattaatttcttttg--attgttgtaacttg-----tagGCCCCAGTAAACTATGTATGCCTTCATTGTGTAAAACCAAGTTTGCGGCCATTATCAATGGCTATGTCAACTGTTGCAATCCATATATTTGGTGATGTGC
upper sequence: GLYMA07G30370.1 (Glycine max), 3'ss of exon 13
lower sequence: AT5G64500.1 (Arabidopsis thaliana), 3'ss of exon 11
gtaattcacttctctgtgaagaagatttcctcatgtttgccttattatagtaagacatgctaaactatatgtacttataatgttagtatttcaactactgtgtttgactattcctctgttagctgagtatcttgaaatccctaacttatattcttaatgaactattatgtttcagtattcttataattttctt----tttagGGTCCTGTGAATTATGTATGTCTCCATTGTGTTAAACCAAGTTTGAGGCCGCTGTCTATGGCTATGTCTACTGTTGCTATTCATATCTTTGGAGATGTAC
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-----------------------------------------------------------------------------------------------------------------------------gtaatctcgacttccaccattcatatacttcatgttttgcaa-atccacctcttctgatttatttcatgatgtttagGGTCCTGTGAATTTCATAGTTCTCCATTGTGTCAAACCAAGTCTGAGACCACTTGCAATGGCGATGTCTACTGTCTCTATCCATATCTTTGGAGATGTAC
upper sequence: GLYMA07G30370.1 (Glycine max), 3'ss of exon 13
lower sequence: Vv00s0282g00040.t01 (Vitis vinifera), 3'ss of exon 10
gtaattcacttctctgtgaagaagatttcctcatgtttgccttattatagtaagacatgctaaactatatgtacttataatgttagtatttcaactactgtgtttgactattcctctgttagctgagtatcttgaaatccctaacttatattcttaatgaactattatgtttcagtattcttataattttctttttagGGTCCTGTGAATTATGTATGTCTCCATTGTGTTAAACCAAGTTTGAGGCCGCTGTCTATGGCTATGTCTACTGTTGCTATTCATATCTTTGGAGATGTAC
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-----------------------------------------------------------------------------------------------agttgcttatg-ctgtactgatgttattatagcacaaataagtatctg-cataggtcagtattcaggatattcacttagacattca-atgtttgccatcgcagGGACCTGTCAATTATGTATGCCTCCATTGTGTGAAACCAAGTTTGCGTCCGCTATCAATGGCTATGTCTACTGTTGCAATTCACATTTTTGGTGATGTTCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|22934040|gb|BU551179.1|BU551179EST: GCTTCCTTGCCCTTTTTGCTGTTGGTGAACTACTTGTTTTTGCCACTCAG GGTCCTGTGAATTATGTATGTCTCCATTGTGTTAAACCAAGTTTGAGGCCG
genomic: GCTTCCTTGCCCTTTTTGCTGTTGGTGAACTACTTGTTTTTGCCACTCAGgtaattcact ... ttctttttagGGTCCTGTGAATTATGTATGTCTCCATTGTGTTAAACCAAGTTTGAGGCCG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acttatattcttaatgaactattatgtttcagtattcttataattttctttttagGGTCCTGTGAATTATGTATGTCTCCATTGTGTTAAACCAAGTTTGAGGCCGCTGTCTATGGCTATGTCTACTGTTGCTATTCATATCTTTGGAGATGTAC
ttttcttttt CT-rich tract
tattatgtttcagtat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaattcacttctctgtgaagaagatttcctcatgtttgccttattatagtaagacatgctaaactatatgtacttataatgttagtatttcaactactgtgtttgactattcctctgttagctgagtatcttgaaatccctaacttatattcttaatgaactattatgtttcagtattcttataattttctttttagGGTCCTGTGAATTATGTATGTCTCCATTGTGTTAAACCAAGTTTGAGGCCGCTGTCTATGGCTATGTCTACTGTTGCTATTCATATCTTTGGAGATGTAC
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