1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtactcgtctcttctacttgtctaaatcacaagacagtgtaattgcatgtgattttacaggtctaagaaagcagtgtcattttttgttgatgtacatttacagGTTGCCAGTATTAATAGAATTCCCAAGCCCAAACCTAAGGTTCAGAAGCCTGTAAAGAACGAAACTGAGAGCAGCAGTGCGCAGAATACAGAGACTTCTG
species | Glycine max |
transcript | GLYMA20G16070.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: CATTTACATCTGAAGAAGTATATCTGAAGGTGCTTGATCTGCAAACCAAG GTTGCCAGTATTAATAGAATTCCCAAGCCCAAACCTAAGGTTCAGAAGCCTEST: gi|14990010|gb|BI315683.1|BI315683
genomic: CATTTACATCTGAAGAAGTATATCTGAAGGTGCTTGATCTGCAAACCAAGgtactcgtct ... acatttacagGTTGCCAGTATTAATAGAATTCCCAAGCCCAAACCTAAGGTTCAGAAGCCT
EST: CATTTACATCTGAAGAAGTATATCTGAAGGTGCTTGATCTGCAAACCAAG GTTGCCAGTATTAATAGAATTCCCAAGCCCAAACCTAAGGTTCAGAAGCCTEST: gi|254342760|gb|GR858922.1|GR858922
genomic: CATTTACATCTGAAGAAGTATATCTGAAGGTGCTTGATCTGCAAACCAAGgtactcgtct ... acatttacagGTTGCCAGTATTAATAGAATTCCCAAGCCCAAACCTAAGGTTCAGAAGCCT
EST: CATTTACATCTGAAGAAGTATATCTGAAGGTGCTTGATCTGCAAACCAAG GTTGCCAGTATTAATAGAATTCCCAAGCCCAAACCTAAGGTTCAGAAGCCTEST: gi|151401588|gb|EV271402.1|EV271402
genomic: CATTTACATCTGAAGAAGTATATCTGAAGGTGCTTGATCTGCAAACCAAGgtactcgtct ... acatttacagGTTGCCAGTATTAATAGAATTCCCAAGCCCAAACCTAAGGTTCAGAAGCCT
EST: CATT-ACATCTGAAGAAGTATATCTGAAGGTGCTTGATCTGCAAACCAAG GTTGCCAGTATTAATAGAATTCCCAAGCCCAAACCTAAGGTTCAGAAGCCT
genomic: CATTTACATCTGAAGAAGTATATCTGAAGGTGCTTGATCTGCAAACCAAGgtactcgtct ... acatttacagGTTGCCAGTATTAATAGAATTCCCAAGCCCAAACCTAAGGTTCAGAAGCCT
gtgattttacaggtctaagaaagcagtgtcattttttgttgatgtacatttacagGTTGCCAGTATTAATAGAATTCCCAAGCCCAAACCTAAGGTTCAGAAGCCTGTAAAGAACGAAACTGAGAGCAGCAGTGCGCAGAATACAGAGACTTCTG
tgttgat putative branch site (score: 4)
attttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactcgtctcttctacttgtctaaatcacaagacagtgtaattgcatgtgattttacaggtctaagaaagcagtgtcattttttgttgatgtacatttacagGTTGCCAGTATTAATAGAATTCCCAAGCCCAAACCTAAGGTTCAGAAGCCTGTAAAGAACGAAACTGAGAGCAGCAGTGCGCAGAATACAGAGACTTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG